Commits · c828a526a559b0426df041b135a43a51e06f7184 · TRANSVIHMI / nfernandez / Reads_Quality_Control · GitLab

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Mar 01, 2023
- Update Snakemake-base env. (like geVarLi) · c828a526
  nicolas.fernandez_ird.fr authored 2 years ago
  
  c828a526
Nov 18, 2022
- Update v.2022.11 · 15615e09
  Nicolas FERNANDEZ NUÑEZ authored 2 years ago
  
  15615e09
- Update v.2022.11 · e748797f
  Nicolas FERNANDEZ NUÑEZ authored 2 years ago
  
  e748797f
Mar 31, 2022
- Fastqc and Fastq-screen rule by sample · 7c74c81d
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  7c74c81d
- Fastqc and Fastq-screen rule by sample · 4d745776
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  4d745776
- Fastqc and Fastq-screen rule by sample · 8d7beb44
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  8d7beb44
Mar 29, 2022
- Passing tests · 019b28fe
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  019b28fe
Jan 27, 2022
- Delete fastq-join-1.3.1.yaml · 01bea397
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  01bea397
- Delete cutadapt-3.5.yaml · f58d3943
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  f58d3943
- Delete sickle-trim-1.33.yaml · ee10658b
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  ee10658b
Jan 26, 2022
- Working on README.md · 4961f780
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  4961f780
Jan 25, 2022
- Focus on Quality Control & update for snakemake 6.12.1 · b28f91c2
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  b28f91c2
Oct 22, 2021
- bwa as aligner · f7c572c0
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  f7c572c0
Oct 14, 2021
- Change timestamp in files · 1084f1a4
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  1084f1a4
- Fixe issue with untar bowtie2 indexes and add date and name to results dir · 0bbb25b1
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  0bbb25b1
Oct 12, 2021
- Add rule merging all reads passing filters · 169a7dd2
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  169a7dd2
- Add rule merging all reads passing filters · d8a0e760
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  d8a0e760
Oct 07, 2021
- Same as Sickle, replace fastq-screen --quiet option with shortcut -q to avoid segmentatin fault 11 · 57b803ed
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  57b803ed
- Change Sickle-trim option for one letter than --word because issue segmentation fault 11 · e7e37790
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  e7e37790
- Change Sickle-trim option for one letter than --word because issue segmentation fault 11 · e47dca80
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  e47dca80
- Update fastq-join-1.3.1.yaml to add gzip to this environment and corect the... · 0453d1bf
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  Update fastq-join-1.3.1.yaml to add gzip to this environment and corect the issue '--rsyncable option'
  0453d1bf
- 'Initial' commit for these copy, after reached the free storage limit of 10 GB... · 289f33c5
  Nicolas FERNANDEZ NUÑEZ authored 3 years ago
  
  'Initial' commit for these copy, after reached the free storage limit of 10 GB on main first one... :s
  289f33c5