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Commit 169a7dd2 authored by Nicolas FERNANDEZ NUÑEZ's avatar Nicolas FERNANDEZ NUÑEZ
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Add rule merging all reads passing filters

parent d8a0e760
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......@@ -144,7 +144,7 @@ rule merge:
# Use: cat {input} > {output}
priority: 1
message:
"Take all passing filter {wildcards.sample} reads"
"Take all passing filters {wildcards.sample} reads"
input:
single = "results/reads/sickle-single/{sample}_cutadapt_sickle-trim_Single.fastq.gz",
forward= "results/reads/fastq-join-unique/{sample}_cutadapt_sickle-trim_fastq-join_Unique_R1.fastq.gz",
......
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