Update Snakemake-base env. (like geVarLi)

Start_RQC.sh

configuration/config.yaml

configuration/fastq-screen_bowtie2.conf

configuration/fastq-screen_bwa.conf

resources/data_test/.gitkeep

...on-BA-1-1_Covid-Seq-Lib-on-MiSeq_250000-reads_R1.fastq.gz

...on-BA-1-1_Covid-Seq-Lib-on-MiSeq_250000-reads_R2.fastq.gz

workflow/environments/linux/bowtie2_v.2.4.5.yaml

workflow/environments/linux/bwa_v.0.7.17.yaml

workflow/environments/linux/fastq-screen_v.0.15.2.yaml

workflow/environments/linux/fastqc_v.0.11.9.yaml

workflow/environments/linux/multiqc_v.1.12.yaml

workflow/environments/linux/snakemake-base_v.2023.02.yaml

workflow/environments/osx/bowtie2_v.2.4.5.yaml

workflow/environments/osx/bwa_v.0.7.17.yaml

workflow/environments/osx/fastq-screen_v.0.15.2.yaml

workflow/environments/osx/fastqc_v.0.11.9.yaml

workflow/environments/osx/multiqc_v.1.12.yaml

workflow/environments/osx/snakemake-base_v.2023.02.yaml

workflow/snakefiles/indexing_genomes.smk