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b28f91c2

Commit b28f91c2 authored 3 years ago by Nicolas FERNANDEZ NUÑEZ

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Focus on Quality Control & update for snakemake 6.12.1

parent ee1618f0

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.gitignore 2 additions, 1 deletion

.gitignore
RQC.sh 252 additions, 0 deletions

RQC.sh
config/config.yaml 9 additions, 54 deletions

config/config.yaml
config/fastq-screen.conf 3 additions, 3 deletions

config/fastq-screen.conf
workflow/envs/cutadapt-3.4.yaml 0 additions, 32 deletions

workflow/envs/cutadapt-3.4.yaml
workflow/envs/cutadapt-3.5.yaml 40 additions, 0 deletions

workflow/envs/cutadapt-3.5.yaml
workflow/envs/multiqc-1.10.1.yaml 0 additions, 84 deletions

workflow/envs/multiqc-1.10.1.yaml
workflow/envs/multiqc-1.11.yaml 108 additions, 0 deletions

workflow/envs/multiqc-1.11.yaml
workflow/rules/reads_quality_control_pipeline.smk 0 additions, 273 deletions

workflow/rules/reads_quality_control_pipeline.smk
workflow/rules/rqc.smk 127 additions, 0 deletions

workflow/rules/rqc.smk

with 541 additions and 447 deletions

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