Explore projects

GraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.

See https://ultreiaio.gitlab.io/ird-observe

GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

A QGIS plugin to use deep learning features to create maps without needing a GPU or large datasets. iamap.readthedocs.io/en/latest/

A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)

Training on Unix Basics https://isi.pages.ird.fr/isi-formation-unix/

This is a place were sits everything that is needed to implement the xplain girst instance that gather our databases (images, widgets, etc...) appart of course from the girst files themselves that need to remain private.

Simple utility to download and process Sentinel-2 images

dojo snakemake assemblage long reads

Application of the FAO-56 formalism with used of remote-sensing daily NDVI forcing to estimate evapotranspiration and irrigation amounts at field scale . Main formalism is from SAMIR tool (CESBIO Lab).

Are you looking for a simplified installation process for your Snakemake workflows, including the various Python packages and the multitude of tools used by your pipelines?

Would you like to simplify the use of your workflows with user-friendly commands and subcommands that even non-bioinformatician users can easy use? Look no further - Snakecdysis is the solution for you!