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Are you looking for a simplified installation process for your Snakemake workflows, including the various Python packages and the multitude of tools used by your pipelines?

Would you like to simplify the use of your workflows with user-friendly commands and subcommands that even non-bioinformatician users can easy use? Look no further - Snakecdysis is the solution for you!

dojo snakemake assemblage long reads

See https://ultreiaio.gitlab.io/ird-observe

Projet ISI pour l'hébergement du Wiki ISI

Simple utility to download and process Sentinel-2 images

A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)

GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

Application of the FAO-56 formalism with used of remote-sensing daily NDVI forcing to estimate evapotranspiration and irrigation amounts at field scale . Main formalism is from SAMIR tool (CESBIO Lab).

This is a place were sits everything that is needed to implement the xplain girst instance that gather our databases (images, widgets, etc...) appart of course from the girst files themselves that need to remain private.

Inference of significant kmers under selection

A QGIS plugin to use deep learning features to create maps without needing a GPU or large datasets. iamap.readthedocs.io/en/latest/

snakemake workflow for mappind single/paired datas

https://isi.pages.ird.fr/cop-gdrs/website/

Materials for Learning Bioinformatics and Enhancing Competencies - Nextflow https://mivegec.pages.ird.fr/dainat/malbec-nextflow

Materials for Learning Bioinformatics and Enhancing Competencies - Unix - basics, data/file manipulation, bash scripting https://mivegec.pages.ird.fr/dainat/malbec-unix/