Explore projects
-
GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en
Updated -
Application of the FAO-56 formalism with used of remote-sensing daily NDVI forcing to estimate evapotranspiration and irrigation amounts at field scale . Main formalism is from SAMIR tool (CESBIO Lab).
Updated -
This is a place were sits everything that is needed to implement the xplain girst instance that gather our databases (images, widgets, etc...) appart of course from the girst files themselves that need to remain private.
Updated -
Updated
-
-
A QGIS plugin to use deep learning features to create maps without needing a GPU or large datasets. iamap.readthedocs.io/en/latest/
Updated -
-
Updated
-
A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)
Updated -
-
Materials for Learning Bioinformatics and Enhancing Competencies - Nextflow https://mivegec.pages.ird.fr/dainat/malbec-nextflow
Updated -
Materials for Learning Bioinformatics and Enhancing Competencies - Unix - basics, data/file manipulation, bash scripting https://mivegec.pages.ird.fr/dainat/malbec-unix/
Updated -
Updated
-
Materials for Learning Bioinformatics and Enhancing Competencies - Containers https://mivegec.pages.ird.fr/dainat/malbec-containers/
Updated -
GraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.
Updated -
Updated
