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GeVarLi : GEnome Assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

GraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.

Simple utility to download and process Sentinel-2 images

Image analysis of microscope spore with YOLO

Application of the FAO-56 formalism with used of remote-sensing daily NDVI forcing to estimate evapotranspiration and irrigation amounts at field scale . Main formalism is from SAMIR tool (CESBIO Lab).

A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)

Inference of significant kmers under selection