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Snakemake

See https://marbec.pages.ird.fr/ob7/observe/observe-toolkit/

dojo snakemake assemblage long reads

GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

Are you looking for a simplified installation process for your Snakemake workflows, including the various Python packages and the multitude of tools used by your pipelines?

Would you like to simplify the use of your workflows with user-friendly commands and subcommands that even non-bioinformatician users can easy use? Look no further - Snakecdysis is the solution for you!

Reads Quality Control (RQC) allow raw NGS reads quality control, before continue with more downstream analysis.

Annotation of virulence factor of fungi (Effector , Cazyme ...)