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MIVEGEC / dainat / MaLBEC - Conda
Creative Commons Attribution 4.0 InternationalMaterials for Learning Bioinformatics and Enhancing Competencies - Conda
Topics: CondaUpdated -
ESPACE-DEV / Sen2Chain
GNU General Public License v3.0 or laterSimple utility to download and process Sentinel-2 images
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DIADE / dynadiv / GrAnnoT
MIT LicenseUpdated -
MIVEGEC / dainat / Les Bioinformelles
Creative Commons Attribution 4.0 InternationalUpdated -
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US191 / CRDAP
GNU General Public License v3.0 onlyCruise Repository for Data Acquisition and Processing
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PHIM / RNAja-pipeline
GNU General Public License v3.0 or laterUpdated -
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A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)
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AMAP / AMAPVox / AMAPVox
CeCILL Free Software License Agreement v2.0LiDAR data voxelisation package
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PHIM / dereeper / SampleTracker
MIT LicenseUpdated -
PHIM / sravel / PodiumASM
MIT LicenseLong-read sequencing is a highly accurate approach that can be used to challenging genomes, such as those containing stretches of highly repetitive elements and lot of structural variant. Long read sequencing can also be used to generate de novo assembly and genome finishing applications Lot of tools are used to make genome assembly with long reads every day and sometimes you don't know wich Assembler tool is the best for your organism. PodiumASM is here for you ! PodiumASM is is an open-source, scalable, modulable and traceable snakemake pipeline, able to compare multiple long read assemblies obtained from multiple assemblers tools. The workflow PodiumASM can help you to choose the best assemblies among all possibilities.
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TRANSVIHMI / nfernandez / GeVarLi
GNU Affero General Public License v3.0GeVarLi pipeline for AFROSCREEN ANRS
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MIVEGEC / dainat / MaLBEC - Unix basics
Creative Commons Attribution 4.0 InternationalMaterials for Learning Bioinformatics and Enhancing Competencies - Unix basics
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