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View VANA-Demux project

TRANSVIHMI / fernandez-nicolas / VANA-Demux

VANA-Demux: Snakemake workflow for high-throughput Cutadapt dual-barcode demultiplexing and quality control of VANA-Seq viral metagenomics Illumina paired-end data.

Illumina Next-Generat... Snakemake Conda FAIR Scalable wor... Short reads reports Unix Viruses TransVIHMI French Natio... SLURM vana

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Updated Sep 08, 2026

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Updated Sep 08, 2026
View WoNDER project

TRANSVIHMI / fernandez-nicolas / WoNDER

https://transvihmi.pages.ird.fr/nfernandez/WoNDER/

Snakemake Bash Next-Generat... Illumina Scalable wor... GNU/Linux Conda FAIR Genome assembly Short reads macOSX Quality Control Oxford Nanopore reports Git Unix Viruses TransVIHMI French Natio... ANRS AFROSCREEN

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Updated Jul 10, 2026

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Updated Jul 10, 2026
View culebront_pipeline project

DIADE / culebront_pipeline

dojo snakemake assemblage long reads

Snakemake Next-Generat... Genome assembly Quality Control reports

2

Updated Jan 22, 2026

2 1 2

Updated Jan 22, 2026
View Reads_Quality_Control project

TRANSVIHMI / fernandez-nicolas / Reads_Quality_Control

Reads Quality Control (RQC) allow raw NGS reads quality control, before continue with more downstream analysis.

Next-Generat... Illumina Short reads Quality Control Snakemake Scalable wor... FAIR ONT Oxford Nanopore MinION Long reads fastq-screen fastqc multiqc html reports

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Updated Mar 20, 2024

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Updated Mar 20, 2024