S
Short reads

Projects with this topic

View WoNDER project

TRANSVIHMI / fernandez-nicolas / WoNDER

https://transvihmi.pages.ird.fr/nfernandez/WoNDER/

Snakemake Bash Next-Generat... Illumina Scalable wor... GNU/Linux Conda FAIR Genome assembly Short reads macOSX Quality Control Oxford Nanopore reports Git Unix Viruses TransVIHMI French Natio... ANRS AFROSCREEN

0

Updated May 28, 2026

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Updated May 28, 2026
View GeVarLi project

TRANSVIHMI / fernandez-nicolas / GeVarLi
CI/CD Catalog (unpublished)

GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

SARS-CoV-2 Genome assembly Variant calling Lineage assi... Nextclade Pangolin Next-Generat... Illumina Short reads Viruses Snakemake Scalable wor... macOSX TransVIHMI French Natio... ANRS AFROSCREEN GNU/Linux FAIR

3

Updated Apr 02, 2026

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Updated Apr 02, 2026
View Reads_Quality_Control project

TRANSVIHMI / fernandez-nicolas / Reads_Quality_Control

Reads Quality Control (RQC) allow raw NGS reads quality control, before continue with more downstream analysis.

Next-Generat... Illumina Short reads Quality Control Snakemake Scalable wor... FAIR ONT Oxford Nanopore MinION Long reads fastq-screen fastqc multiqc html reports

2

Updated Mar 20, 2024

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Updated Mar 20, 2024