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Scalable workflows for analyzing genomes

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View GeVarLi project

TRANSVIHMI / fernandez-nicolas / GeVarLi
CI/CD Catalog project

GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

SARS-CoV-2 Genome assembly Variant calling Lineage assi... Nextclade Pangolin Next-Generat... Illumina Short reads Viruses Snakemake Scalable wor... macOSX TransVIHMI French Natio... ANRS AFROSCREEN GNU/Linux FAIR

3

Updated Sep 30, 2025

3 0 0

Updated Sep 30, 2025
View frangiPANe_snake project

DIADE / frangiPANe_snake

Snakemake Illumina pangenomics Scalable wor...

2

Updated Feb 04, 2025

2 0 3 14

Updated Feb 04, 2025
View Reads_Quality_Control project

TRANSVIHMI / fernandez-nicolas / Reads_Quality_Control

Reads Quality Control (RQC) allow raw NGS reads quality control, before continue with more downstream analysis.

Next-Generat... Illumina Short reads Quality Control Snakemake Scalable wor... FAIR ONT Oxford Nanopore MinION Long reads fastq-screen fastqc multiqc html reports

2

Updated Mar 20, 2024

2 0 0

Updated Mar 20, 2024