I
Illumina

Projects with this topic

View WoNDER project

TRANSVIHMI / fernandez-nicolas / WoNDER

https://transvihmi.pages.ird.fr/nfernandez/WoNDER/

Snakemake Bash Next-Generat... Illumina Scalable wor... GNU/Linux Conda FAIR Genome assembly Short reads macOSX Quality Control Oxford Nanopore reports Git Unix Viruses TransVIHMI French Natio... ANRS AFROSCREEN

0

Updated May 28, 2026

0 0 0 0

Updated May 28, 2026
View GeVarLi project

TRANSVIHMI / fernandez-nicolas / GeVarLi
CI/CD Catalog (unpublished)

GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

SARS-CoV-2 Genome assembly Variant calling Lineage assi... Nextclade Pangolin Next-Generat... Illumina Short reads Viruses Snakemake Scalable wor... macOSX TransVIHMI French Natio... ANRS AFROSCREEN GNU/Linux FAIR

3

Updated Apr 02, 2026

3 0 0

Updated Apr 02, 2026
View frangiPANe_snake project

DIADE / frangiPANe_snake

Snakemake Illumina pangenomics Scalable wor...

2

Updated Feb 04, 2025

2 0 3 14

Updated Feb 04, 2025
View Reads_Quality_Control project

TRANSVIHMI / fernandez-nicolas / Reads_Quality_Control

Reads Quality Control (RQC) allow raw NGS reads quality control, before continue with more downstream analysis.

Next-Generat... Illumina Short reads Quality Control Snakemake Scalable wor... FAIR ONT Oxford Nanopore MinION Long reads fastq-screen fastqc multiqc html reports

2

Updated Mar 20, 2024

2 0 0

Updated Mar 20, 2024