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basj script to Install Conda with Miniforge distribution

Template Quarto for ISI training. Automatic deployment on Gitlab pages (cf. https://isi.pages.ird.fr/communication/template-quarto)

GraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.

A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)

Project use to manage Matlab compiler versions

Slides vers la formation Python:

https://isi.pages.ird.fr/formation-python

Git : l'outil incontournable pour la gestion et le contrôle de version de vos fichiers https://isi.pages.ird.fr/isi-git-training-slides

Git : l'outil incontournable pour la gestion et le contrôle de version de vos fichiers https://isi.pages.ird.fr/isi-formation-git/

GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

Cruise Repository for Data Acquisition and Processing

Materials for Learning Bioinformatics and Enhancing Competencies - Conda https://mivegec.pages.ird.fr/dainat/malbec-conda/

snakemake workflow for mappind single/paired datas