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MIVEGEC / dainat / MaLBEC - Conda
Creative Commons Attribution 4.0 InternationalMaterials for Learning Bioinformatics and Enhancing Competencies - Conda
Topics: CondaUpdated -
TRANSVIHMI / nfernandez / GeVarLi
GNU Affero General Public License v3.0GeVarLi pipeline for AFROSCREEN ANRS
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A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)
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PHIM / sravel / EffiCAZ
GNU General Public License v3.0 or laterAnnotation of virulence factor of fungi (Effector , Cazyme ...)
Topics: SnakemakeUpdated -
PHIM / sravel / DNAnnot
GNU General Public License v3.0 or laterThis pipeline is an automatic structural annotation workflows written in snakemake. The annotation is based on two tools which uses RNA-Seq and/or protein homology information for predict coding sequence. One of this tools is BRAKER which use GeneMark-EX and AUGUSTUS. And the other tool is AUGUSTUS alone for improve annotation of small coding sequences with few or no intron. Before the annotation, the repeat element of genome are masked for avoid annotation probleme. In addition this workflows can perform a illumina assembly with ABySS using différent value of kmere.
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DIADE / culebront_pipeline
GNU General Public License v3.0 or laterdojo snakemake assemblage long reads
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US191 / CRDAP
GNU General Public License v3.0 onlyCruise Repository for Data Acquisition and Processing
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DIADE / Recombination_landscape / Biparental LC-NGS Snakemake
GNU Affero General Public License v3.0Updated -
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