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MIVEGEC / dainat / MaLBEC - Conda
Creative Commons Attribution 4.0 InternationalMaterials for Learning Bioinformatics and Enhancing Competencies - Conda
Topics: CondaUpdated -
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ESPACE-DEV / Personnels / alexandre / s1tiling_jupyter
Apache License 2.0Updated -
PHIM / sravel / DNAnnot
GNU General Public License v3.0 or laterThis pipeline is an automatic structural annotation workflows written in snakemake. The annotation is based on two tools which uses RNA-Seq and/or protein homology information for predict coding sequence. One of this tools is BRAKER which use GeneMark-EX and AUGUSTUS. And the other tool is AUGUSTUS alone for improve annotation of small coding sequences with few or no intron. Before the annotation, the repeat element of genome are masked for avoid annotation probleme. In addition this workflows can perform a illumina assembly with ABySS using différent value of kmere.
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PHIM / sravel / EffiCAZ
GNU General Public License v3.0 or laterAnnotation of virulence factor of fungi (Effector , Cazyme ...)
Topics: SnakemakeUpdated -
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PHIM / acomte / RNAja
GNU General Public License v3.0 or laterUpdated -
PHIM / RNAja-pipeline
GNU General Public License v3.0 or laterUpdated -
TRANSVIHMI / nfernandez / SLAM
GNU Affero General Public License v3.0SLURM Lightweight Automated Manager
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DIADE / Recombination_landscape / Biparental LC-NGS Snakemake
GNU Affero General Public License v3.0Updated