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GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en

Training Python on Bioinformatics of i-Trop IRD

A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)

GraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.

SLURM Lightweight Automated Manager

This Shiny application, part of the GlobalTunaAtlas project, is designed to facilitate the exploration and analysis of worldwide tuna fisheries data.

basj script to Install Conda with Miniforge distribution

Fasta-Blast, a bash script to blast online a series of fasta files from a given directory, and provide the result in a conveniant TSV format.

Materials for Learning Bioinformatics and Enhancing Competencies - Conda https://mivegec.pages.ird.fr/dainat/malbec-conda/

Template Quarto for ISI training. Automatic deployment on Gitlab pages (cf. https://isi.pages.ird.fr/communication/template-quarto)

Project use to manage Matlab compiler versions