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alexis.dereeper_ird.fr alexis.dereeper_ird.fr
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aurore.comte_ird.fr
aurore.comte_ird.fr
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christine.tranchant_ird.fr
christine.tranchant_ird.fr
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florian.charriat_cirad.fr florian.charriat_cirad.fr
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julie.orjuela_ird.fr
julie.orjuela_ird.fr
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sebastien.cunnac_ird.fr sebastien.cunnac_ird.fr
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sebastien.ravel_cirad.fr
sebastien.ravel_cirad.fr
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stephane.demita_inrae.fr stephane.demita_inrae.fr
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theo.durand_cirad.fr theo.durand_cirad.fr
- Mar 26, 2024
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julie.orjuela_ird.fr authored
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- Mar 22, 2024
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julie.orjuela_ird.fr authored
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aurore.comte_ird.fr authoredadd control on module, remove PAIRED from config, correct some bug, one rule for hisat2_map See merge request !11
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aurore.comte_ird.fr authored
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- Mar 13, 2024
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julie.orjuela_ird.fr authored
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- Mar 12, 2024
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aurore.comte_ird.fr authored
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
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- Mar 08, 2024
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
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aurore.comte_ird.fr authored
add image Closes #6 See merge request !10
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
add logo, change config file, modify multiqc rule See merge request !9
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aurore.comte_ird.fr authored
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- Feb 16, 2024
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aurore.comte_ird.fr authored
the names of the output files for diffex contain now the name of the counting tool Closes #6 See merge request !8
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aurore.comte_ird.fr authored
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- Feb 15, 2024
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aurore.comte_ird.fr authored
correct bug qui mettait une virgule à la fin de chaque ligne dans le fichier de comptage star_star Closes #6 See merge request !7
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
Resolve "add htseq-count as counter" Closes #5 See merge request !6
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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- Feb 14, 2024
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
Integration of STAR as mapper. Closes #4 See merge request !4
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
-remove todo
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aurore.comte_ird.fr authored
- modification of stringtie rules to use hisat2 output and star output - add in config file the possibility to use the pipeline in one shot or in comparison mode
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- Feb 13, 2024
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aurore.comte_ird.fr authored
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- Feb 12, 2024
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aurore.comte_ird.fr authored
- fastq.gz should be uncompressed for star - changer genomedir for star mapping
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aurore.comte_ird.fr authored
- 1 rule index - 1 rule star_single - 1 rule star_paired add star in singularity
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- Feb 09, 2024
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aurore.comte_ird.fr authored
Resolve "manage single and paired" Closes #3 See merge request !3
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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