RNAja
About RNAja
RNAja is a pipeline written in snakemake, allowing to analyse RNAseq data, perform differential expression analysis on it and output a report in Rmarkdown. The output are compatible with the database diffexDB https://bioinfo-web.mpl.ird.fr/cgi-bin2/microarray/public/diffexdb.cgi.
Homepage:
Authors
- Aurore Comte (IRD)
Some parts of RNAja code and documentation were inspired or came from the pipelines below.
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Culebront (Julie Orjuela et al.) https://github.com/SouthGreenPlatform/culebrONT
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sRNAmake (Sebastien Cunnac et al.) https://github.com/Aucomte/sRNAmake
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BulkRNA (Camille Cohen) https://github.com/CamilleCohen/ProjetTuteur-_BulkRNA
Thanks and acknowledgements
Thanks to Ndomassi Tando (i-Trop IRD) by administration support.
The authors acknowledge the IRD i-Trop HPC https://bioinfo.ird.fr/ (South Green Platform http://www.southgreen.fr) at IRD Montpellier for providing HPC resources that have contributed to this work.
Thanks to Alexis Dereeper for his help and the development of diffexDB https://bioinfo-web.mpl.ird.fr/cgi-bin2/microarray/public/diffexdb.cgi.
License
Licenced under MIT https://opensource.org/license/mit/.
Intellectual property belongs to IRD and authors.