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RNAja

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About RNAja

RNAja is a pipeline written in snakemake, allowing to analyse RNAseq data, perform differential expression analysis on it and output a report in Rmarkdown. The output are compatible with the database diffexDB https://bioinfo-web.mpl.ird.fr/cgi-bin2/microarray/public/diffexdb.cgi.

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Authors

  • Aurore Comte (IRD)

Some parts of RNAja code and documentation were inspired or came from the pipelines below.

Thanks and acknowledgements

Thanks to Ndomassi Tando (i-Trop IRD) by administration support.

The authors acknowledge the IRD i-Trop HPC https://bioinfo.ird.fr/ (South Green Platform http://www.southgreen.fr) at IRD Montpellier for providing HPC resources that have contributed to this work.

Thanks to Alexis Dereeper for his help and the development of diffexDB https://bioinfo-web.mpl.ird.fr/cgi-bin2/microarray/public/diffexdb.cgi.

License

Licenced under MIT https://opensource.org/license/mit/.

Intellectual property belongs to IRD and authors.