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Merge branch '6-test-quarto-pour-de' into 'main'
aurore.comte_ird.fr authored 
add logo, change config file, modify multiqc rule

See merge request !9
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RNAja
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README.md

RNAja

PythonVersions SnakemakeVersions Singularity

About RNAja

RNAja is a pipeline written in snakemake, allowing to analyse RNAseq data, perform differential expression analysis on it and output a report in Rmarkdown. The output are compatible with the database diffexDB https://bioinfo-web.mpl.ird.fr/cgi-bin2/microarray/public/diffexdb.cgi.

Homepage:

Authors

  • Aurore Comte (IRD)

Some parts of RNAja code and documentation were inspired or came from the pipelines below.

Thanks and acknowledgements

Thanks to Ndomassi Tando (i-Trop IRD) by administration support.

The authors acknowledge the IRD i-Trop HPC https://bioinfo.ird.fr/ (South Green Platform http://www.southgreen.fr) at IRD Montpellier for providing HPC resources that have contributed to this work.

Thanks to Alexis Dereeper for his help and the development of diffexDB https://bioinfo-web.mpl.ird.fr/cgi-bin2/microarray/public/diffexdb.cgi.

License

Licenced under MIT https://opensource.org/license/mit/.

Intellectual property belongs to IRD and authors.