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Commit d1e7b3cd authored by jacques.dainat_ird.fr's avatar jacques.dainat_ird.fr
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......@@ -5,10 +5,9 @@ reading tips for you:
**Documentation**
* [Nextflow Training](https://training.nextflow.io/latest/) The offical Nextflow community training portal!
* [Nextflow Documentation](https://www.nextflow.io/docs/latest/index.html) The official nextflow documentation very well written. Do not hesitate to extensively use the search bar!
* [Basic pipeline example from nextflow.io](https://www.nextflow.io/example1.html) Do not hesitate to look at other examples
* [Nextflow Training Fundamentals](https://training.nextflow.io/basic_training/) The offical training module from nextflow.io to learn the fundamentals.
* [Nextflow Training Advanded](https://training.nextflow.io/advanced/) The offical training module from nextflow.io for advanced users.
* [Nextflow Cheat Sheet](https://github.com/danrlu/nextflow_cheatsheet/blob/main/nextflow_cheatsheet.pdf) A nice nextflow cheat sheet made by @dabrlu .
* [Software Carpentry Nextflow training](https://carpentries-incubator.github.io/workflows-nextflow/index.html). High quality course made by the [Software Carpentry](https://software-carpentry.org).
* [Bioinformatics Workshop on Tools for Reproducible Research - Nextflow](https://southgreenplatform.github.io/training_reproducible_research/pages/nextflow/nextflow-1-introduction/) A course based on [NBIS material](https://github.com/NBISweden/workshop-reproducible-research) to learn Nextflow basics.
......
Please follow this link to continue the training: [https://training.nextflow.io/latest/hello_nextflow/](https://training.nextflow.io/latest/hello_nextflow/)
<!-- {{ external_markdown('https://github.com/nextflow-io/training/edit/master/docs/hello_nextflow/index.md', '') }} -->
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......@@ -17,7 +17,7 @@ Then let's get the material from the [nextflow-io](https://github.com/nextflow-i
```bash
git clone https://github.com/nextflow-io/training.git
cd training/nf-training
cd training/hello-nextflow
```
{% endraw %}
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......@@ -100,11 +100,6 @@ nav:
- Nextflow:
- Introduction: pages/nextflow/nextflow-1-introduction.md
- Setup: pages/nextflow/nextflow-installation.md
- Getting started with nf-core: pages/nextflow/nextflow-nfcore.md
- The basics: pages/nextflow/nextflow-2-the-basics.md
- Executing workflows: pages/nextflow/nextflow-3-executing-workflows.md
- Working with process: pages/nextflow/nextflow-4-working-with-processes.md
- Workflow configuration: pages/nextflow/nextflow-5-workflow-configuration.md
- Optmising the MRSA workflow: pages/nextflow/nextflow-6-optimising-the-mrsa-workflow.md
- Extra material: pages/nextflow/nextflow-7-extra-material.md
- Nf-core: pages/nextflow/nextflow-nfcore.md
- Nextflow for Newcomers: pages/nextflow/nextflow-hello_nextflow.md
- Cheat sheet: pages/cheat_sheet/nextflow.md
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