From d1e7b3cddbf276a192601bda9456f32e4e05c2bd Mon Sep 17 00:00:00 2001
From: Jacques Dainat <jacques.dainat@ird.fr>
Date: Mon, 17 Mar 2025 14:38:52 +0100
Subject: [PATCH] last changes
---
docs/pages/cheat_sheet/nextflow.md | 3 +--
docs/pages/nextflow/nextflow-hello_nextflow.md | 3 +++
docs/pages/nextflow/nextflow-installation.md | 2 +-
mkdocs.yml | 9 ++-------
4 files changed, 7 insertions(+), 10 deletions(-)
create mode 100644 docs/pages/nextflow/nextflow-hello_nextflow.md
diff --git a/docs/pages/cheat_sheet/nextflow.md b/docs/pages/cheat_sheet/nextflow.md
index 90c189c..15b5466 100644
--- a/docs/pages/cheat_sheet/nextflow.md
+++ b/docs/pages/cheat_sheet/nextflow.md
@@ -5,10 +5,9 @@ reading tips for you:
**Documentation**
+ * [Nextflow Training](https://training.nextflow.io/latest/) The offical Nextflow community training portal!
* [Nextflow Documentation](https://www.nextflow.io/docs/latest/index.html) The official nextflow documentation very well written. Do not hesitate to extensively use the search bar!
* [Basic pipeline example from nextflow.io](https://www.nextflow.io/example1.html) Do not hesitate to look at other examples
- * [Nextflow Training Fundamentals](https://training.nextflow.io/basic_training/) The offical training module from nextflow.io to learn the fundamentals.
- * [Nextflow Training Advanded](https://training.nextflow.io/advanced/) The offical training module from nextflow.io for advanced users.
* [Nextflow Cheat Sheet](https://github.com/danrlu/nextflow_cheatsheet/blob/main/nextflow_cheatsheet.pdf) A nice nextflow cheat sheet made by @dabrlu .
* [Software Carpentry Nextflow training](https://carpentries-incubator.github.io/workflows-nextflow/index.html). High quality course made by the [Software Carpentry](https://software-carpentry.org).
* [Bioinformatics Workshop on Tools for Reproducible Research - Nextflow](https://southgreenplatform.github.io/training_reproducible_research/pages/nextflow/nextflow-1-introduction/) A course based on [NBIS material](https://github.com/NBISweden/workshop-reproducible-research) to learn Nextflow basics.
diff --git a/docs/pages/nextflow/nextflow-hello_nextflow.md b/docs/pages/nextflow/nextflow-hello_nextflow.md
new file mode 100644
index 0000000..aa0dd83
--- /dev/null
+++ b/docs/pages/nextflow/nextflow-hello_nextflow.md
@@ -0,0 +1,3 @@
+Please follow this link to continue the training: [https://training.nextflow.io/latest/hello_nextflow/](https://training.nextflow.io/latest/hello_nextflow/)
+
+<!-- {{ external_markdown('https://github.com/nextflow-io/training/edit/master/docs/hello_nextflow/index.md', '') }} -->
\ No newline at end of file
diff --git a/docs/pages/nextflow/nextflow-installation.md b/docs/pages/nextflow/nextflow-installation.md
index a374cd5..c0791c8 100644
--- a/docs/pages/nextflow/nextflow-installation.md
+++ b/docs/pages/nextflow/nextflow-installation.md
@@ -17,7 +17,7 @@ Then let's get the material from the [nextflow-io](https://github.com/nextflow-i
```bash
git clone https://github.com/nextflow-io/training.git
-cd training/nf-training
+cd training/hello-nextflow
```
{% endraw %}
\ No newline at end of file
diff --git a/mkdocs.yml b/mkdocs.yml
index d658a2c..edb8cda 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -100,11 +100,6 @@ nav:
- Nextflow:
- Introduction: pages/nextflow/nextflow-1-introduction.md
- Setup: pages/nextflow/nextflow-installation.md
- - Getting started with nf-core: pages/nextflow/nextflow-nfcore.md
- - The basics: pages/nextflow/nextflow-2-the-basics.md
- - Executing workflows: pages/nextflow/nextflow-3-executing-workflows.md
- - Working with process: pages/nextflow/nextflow-4-working-with-processes.md
- - Workflow configuration: pages/nextflow/nextflow-5-workflow-configuration.md
- - Optmising the MRSA workflow: pages/nextflow/nextflow-6-optimising-the-mrsa-workflow.md
- - Extra material: pages/nextflow/nextflow-7-extra-material.md
+ - Nf-core: pages/nextflow/nextflow-nfcore.md
+ - Nextflow for Newcomers: pages/nextflow/nextflow-hello_nextflow.md
- Cheat sheet: pages/cheat_sheet/nextflow.md
\ No newline at end of file
--
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