diff --git a/docs/pages/cheat_sheet/nextflow.md b/docs/pages/cheat_sheet/nextflow.md index 90c189c43c012f525ca6c7fb278d431ed8e9ee3a..15b5466122092912958b37a40bc3e098c67b8a6f 100644 --- a/docs/pages/cheat_sheet/nextflow.md +++ b/docs/pages/cheat_sheet/nextflow.md @@ -5,10 +5,9 @@ reading tips for you: **Documentation** + * [Nextflow Training](https://training.nextflow.io/latest/) The offical Nextflow community training portal! * [Nextflow Documentation](https://www.nextflow.io/docs/latest/index.html) The official nextflow documentation very well written. Do not hesitate to extensively use the search bar! * [Basic pipeline example from nextflow.io](https://www.nextflow.io/example1.html) Do not hesitate to look at other examples - * [Nextflow Training Fundamentals](https://training.nextflow.io/basic_training/) The offical training module from nextflow.io to learn the fundamentals. - * [Nextflow Training Advanded](https://training.nextflow.io/advanced/) The offical training module from nextflow.io for advanced users. * [Nextflow Cheat Sheet](https://github.com/danrlu/nextflow_cheatsheet/blob/main/nextflow_cheatsheet.pdf) A nice nextflow cheat sheet made by @dabrlu . * [Software Carpentry Nextflow training](https://carpentries-incubator.github.io/workflows-nextflow/index.html). High quality course made by the [Software Carpentry](https://software-carpentry.org). * [Bioinformatics Workshop on Tools for Reproducible Research - Nextflow](https://southgreenplatform.github.io/training_reproducible_research/pages/nextflow/nextflow-1-introduction/) A course based on [NBIS material](https://github.com/NBISweden/workshop-reproducible-research) to learn Nextflow basics. diff --git a/docs/pages/nextflow/nextflow-hello_nextflow.md b/docs/pages/nextflow/nextflow-hello_nextflow.md new file mode 100644 index 0000000000000000000000000000000000000000..aa0dd83460e6d8eb35255a5ab9be0f52493b46d8 --- /dev/null +++ b/docs/pages/nextflow/nextflow-hello_nextflow.md @@ -0,0 +1,3 @@ +Please follow this link to continue the training: [https://training.nextflow.io/latest/hello_nextflow/](https://training.nextflow.io/latest/hello_nextflow/) + +<!-- {{ external_markdown('https://github.com/nextflow-io/training/edit/master/docs/hello_nextflow/index.md', '') }} --> \ No newline at end of file diff --git a/docs/pages/nextflow/nextflow-installation.md b/docs/pages/nextflow/nextflow-installation.md index a374cd5fac01bde28d14d475b2b85f95a017c4ae..c0791c898118e5aee835b37f8aa1a2cc77470747 100644 --- a/docs/pages/nextflow/nextflow-installation.md +++ b/docs/pages/nextflow/nextflow-installation.md @@ -17,7 +17,7 @@ Then let's get the material from the [nextflow-io](https://github.com/nextflow-i ```bash git clone https://github.com/nextflow-io/training.git -cd training/nf-training +cd training/hello-nextflow ``` {% endraw %} \ No newline at end of file diff --git a/mkdocs.yml b/mkdocs.yml index d658a2c91f6c5c2f0f8deb66b2a0fce0a74c050b..edb8cdab81015fb08a5079553cdc12e149b30505 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -100,11 +100,6 @@ nav: - Nextflow: - Introduction: pages/nextflow/nextflow-1-introduction.md - Setup: pages/nextflow/nextflow-installation.md - - Getting started with nf-core: pages/nextflow/nextflow-nfcore.md - - The basics: pages/nextflow/nextflow-2-the-basics.md - - Executing workflows: pages/nextflow/nextflow-3-executing-workflows.md - - Working with process: pages/nextflow/nextflow-4-working-with-processes.md - - Workflow configuration: pages/nextflow/nextflow-5-workflow-configuration.md - - Optmising the MRSA workflow: pages/nextflow/nextflow-6-optimising-the-mrsa-workflow.md - - Extra material: pages/nextflow/nextflow-7-extra-material.md + - Nf-core: pages/nextflow/nextflow-nfcore.md + - Nextflow for Newcomers: pages/nextflow/nextflow-hello_nextflow.md - Cheat sheet: pages/cheat_sheet/nextflow.md \ No newline at end of file