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TRANSVIHMI / nfernandez / SLAM
GNU Affero General Public License v3.0SLURM Lightweight Automated Manager
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MIVEGEC / froissart / sitephagesfr
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TSG-QC is a software for interactive analysis and validation of underway SST / SSS (Sea Surface Temperature and Sea Surface Salinity) measurements from a SeaBird Thermosalinograph (TSG). It has been developed under Matlab.
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PHIM / sravel / RattleSNP
GNU General Public License v3.0 or latersnakemake workflow for mappind single/paired datas
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PHIM / acomte / RNAja
GNU General Public License v3.0 or laterUpdated -
CESBIO / Modélisation / SPARSE
GNU General Public License v3.0 onlyUpdated -
MARBEC / ob7 / training / quarto-training
Creative Commons Attribution Share Alike 4.0 InternationalUpdated -
PHIM / sravel / DNAnnot
GNU General Public License v3.0 or laterThis pipeline is an automatic structural annotation workflows written in snakemake. The annotation is based on two tools which uses RNA-Seq and/or protein homology information for predict coding sequence. One of this tools is BRAKER which use GeneMark-EX and AUGUSTUS. And the other tool is AUGUSTUS alone for improve annotation of small coding sequences with few or no intron. Before the annotation, the repeat element of genome are masked for avoid annotation probleme. In addition this workflows can perform a illumina assembly with ABySS using différent value of kmere.
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dataGUI est un outil de visualisation en Perl/Matlab de données océanographiques. Utilisé lors d’une campagne, il permet de valider et contrôler rapidementla qualité des données en temps quasi-réel.
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