Explore projects
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PHIM / dereeper / SampleTracker
MIT LicenseUpdated -
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DIADE / Recombination_landscape / PopSimul
GNU Affero General Public License v3.0Updated -
PHIM / RNAja-pipeline
GNU General Public License v3.0 or laterUpdated -
PHIM / acomte / RNAja
GNU General Public License v3.0 or laterUpdated -
DIADE / dynadiv / GrAnnoT
MIT LicenseUpdated -
Updated
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Offers tools to download, process, visualize particulate matter (PM2.5 and PM10) concentrations in Brazil.
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PHIM / sravel / EffiCAZ
GNU General Public License v3.0 or laterAnnotation of virulence factor of fungi (Effector , Cazyme ...)
Topics: SnakemakeUpdated -
PHIM / sravel / DNAnnot
GNU General Public License v3.0 or laterThis pipeline is an automatic structural annotation workflows written in snakemake. The annotation is based on two tools which uses RNA-Seq and/or protein homology information for predict coding sequence. One of this tools is BRAKER which use GeneMark-EX and AUGUSTUS. And the other tool is AUGUSTUS alone for improve annotation of small coding sequences with few or no intron. Before the annotation, the repeat element of genome are masked for avoid annotation probleme. In addition this workflows can perform a illumina assembly with ABySS using différent value of kmere.
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ESPACE-DEV / Personnels / alexandre / s1tiling_jupyter
Apache License 2.0Updated -
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US191 / Oceano2kml
GNU General Public License v3.0 or laterUpdated -
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MIVEGEC / dainat / MaLBEC - Git
Creative Commons Attribution 4.0 InternationalMaterials for Learning Bioinformatics and Enhancing Competencies - Git
Topics: GitUpdated -
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