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PHIM / acomte / RNAja
GNU General Public License v3.0 or laterUpdated -
PHIM / sravel / DNAnnot
GNU General Public License v3.0 or laterThis pipeline is an automatic structural annotation workflows written in snakemake. The annotation is based on two tools which uses RNA-Seq and/or protein homology information for predict coding sequence. One of this tools is BRAKER which use GeneMark-EX and AUGUSTUS. And the other tool is AUGUSTUS alone for improve annotation of small coding sequences with few or no intron. Before the annotation, the repeat element of genome are masked for avoid annotation probleme. In addition this workflows can perform a illumina assembly with ABySS using différent value of kmere.
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Offers tools to download, process, visualize particulate matter (PM2.5 and PM10) concentrations in Brazil.
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PHIM / sravel / EffiCAZ
GNU General Public License v3.0 or laterAnnotation of virulence factor of fungi (Effector , Cazyme ...)
Topics: SnakemakeUpdated -
ESPACE-DEV / Personnels / alexandre / s1tiling_jupyter
Apache License 2.0Updated -
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US191 / Oceano2kml
GNU General Public License v3.0 or laterUpdated -
MIVEGEC / dainat / MaLBEC - Git
Creative Commons Attribution 4.0 InternationalMaterials for Learning Bioinformatics and Enhancing Competencies - Git
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Count, merge, split, rename, and other usefull tools for FASTA sequences files
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AMAP / FOTOTEX
MIT LicenseFOTO for FOurier transform Textural Ordination
Predicting stand structure parameters for tropical forests from remotely sensed data by defining an index of canopy texture from the ordination of the Fourier spectra computed for tropical rain forest images.
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