Explore projects
-
Updated
-
Updated
-
Updated
-
PHIM / sravel / Snakecdysis
MIT LicenseAre you looking for a simplified installation process for your Snakemake workflows, including the various Python packages and the multitude of tools used by your pipelines?
Would you like to simplify the use of your workflows with user-friendly commands and subcommands that even non-bioinformatician users can easy use? Look no further - Snakecdysis is the solution for you!
Updated -
AMAP / FOTOTEX
MIT LicenseFOTO for FOurier transform Textural Ordination
Predicting stand structure parameters for tropical forests from remotely sensed data by defining an index of canopy texture from the ordination of the Fourier spectra computed for tropical rain forest images.
Updated -
Updated
-
Updated
-
MIVEGEC / dainat / MaLBEC - Git
Creative Commons Attribution 4.0 InternationalMaterials for Learning Bioinformatics and Enhancing Competencies - Git
Topics: GitUpdated -
Updated
-
US191 / Oceano2kml
GNU General Public License v3.0 or laterUpdated -
Updated
-
ESPACE-DEV / Personnels / alexandre / s1tiling_jupyter
Apache License 2.0Updated -
PHIM / sravel / DNAnnot
GNU General Public License v3.0 or laterThis pipeline is an automatic structural annotation workflows written in snakemake. The annotation is based on two tools which uses RNA-Seq and/or protein homology information for predict coding sequence. One of this tools is BRAKER which use GeneMark-EX and AUGUSTUS. And the other tool is AUGUSTUS alone for improve annotation of small coding sequences with few or no intron. Before the annotation, the repeat element of genome are masked for avoid annotation probleme. In addition this workflows can perform a illumina assembly with ABySS using différent value of kmere.
Updated -
PHIM / sravel / EffiCAZ
GNU General Public License v3.0 or laterAnnotation of virulence factor of fungi (Effector , Cazyme ...)
Topics: SnakemakeUpdated -
-
Offers tools to download, process, visualize particulate matter (PM2.5 and PM10) concentrations in Brazil.
Updated