Skip to content
Snippets Groups Projects
Commit 48dcc6a7 authored by christine.tranchant_ird.fr's avatar christine.tranchant_ird.fr
Browse files

fix bug mergeflagstats

parent b0cec1a1
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
frangiPANe/snakefiles/merge_flagstat.smk
+ 1
− 1
View file @ 48dcc6a7
......@@ -2,7 +2,7 @@ rule merge_flagstat:
input:
stat_files= expand(rules.samtools_flagstat.output.stat_file, sample_name=SAMPLES, ref_name=REF)
output:
stat_file = f"{frangipane_obj.path_stat_sum}/01_all_flagstat-stats-ref_nam.csv"
stat_file = f"{frangipane_obj.path_stat_sum}/01_all_flagstat-stats-ref_bam.csv"
log:
output = f"{frangipane_obj.path_logs}/report/merging_flagstat.o",
error = f"{frangipane_obj.path_logs}/report/merging_flagstat.e"
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment