From 48dcc6a72a392439435ebdb4bb29997b649acc32 Mon Sep 17 00:00:00 2001
From: christine <christine.tranchant@ird.fr>
Date: Sun, 7 Jan 2024 14:55:23 +0100
Subject: [PATCH] fix bug mergeflagstats
---
frangiPANe/snakefiles/merge_flagstat.smk | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/frangiPANe/snakefiles/merge_flagstat.smk b/frangiPANe/snakefiles/merge_flagstat.smk
index 428d506..8c4d82e 100644
--- a/frangiPANe/snakefiles/merge_flagstat.smk
+++ b/frangiPANe/snakefiles/merge_flagstat.smk
@@ -2,7 +2,7 @@ rule merge_flagstat:
input:
stat_files= expand(rules.samtools_flagstat.output.stat_file, sample_name=SAMPLES, ref_name=REF)
output:
- stat_file = f"{frangipane_obj.path_stat_sum}/01_all_flagstat-stats-ref_nam.csv"
+ stat_file = f"{frangipane_obj.path_stat_sum}/01_all_flagstat-stats-ref_bam.csv"
log:
output = f"{frangipane_obj.path_logs}/report/merging_flagstat.o",
error = f"{frangipane_obj.path_logs}/report/merging_flagstat.e"
--
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