modified output form

inference.py

@@ -259,11 +259,12 @@ for feature in Features.values(): # add the sequence of all features
 
 # analysing the variations for all the mrna :
 for mrna_id in mrna_var.keys():
+    print("analysis of the variations in the mRNA",mrna_id,":\n")
     cds_var=mrna_var[mrna_id]
     for cds_id in cds_var:
 
         cds=Features[cds_id]
-        print("analysis of the variations in the CDS",cds_id,":\n")
+        print("\nCDS",cds_id,":")
         frameshift=0
         for index, var in enumerate(cds_var[cds_id]): # for each variation in the current cds :
             type_var=var[8]
@@ -280,7 +281,7 @@ for mrna_id in mrna_var.keys():
                 else:
                     length_alt=len(var[10])
                 
-                print("variation",index+1, ":")
+                print("\nvariation",index+1, ":")
                 
                 if posVar[0]<3:
                     print("variation of the start codon, mRNA most likely wont be translated")
@@ -354,5 +355,3 @@ for mrna_id in mrna_var.keys():
                 # possible that it prints too many variations : for ex if we have a snp on the first and the last base of a codon, 
                 # while printing the effect of the first snp we aso use the second one.
 
-            print("\n")
-