From 18259c64338fa69f6ff52b13fb1e016937d21bdf Mon Sep 17 00:00:00 2001
From: NMarthe <nina.marthe@ird.fr>
Date: Tue, 9 Jan 2024 13:34:20 +0100
Subject: [PATCH] modified output form
---
inference.py | 7 +++----
1 file changed, 3 insertions(+), 4 deletions(-)
diff --git a/inference.py b/inference.py
index 58dae2e..146c9c8 100644
--- a/inference.py
+++ b/inference.py
@@ -259,11 +259,12 @@ for feature in Features.values(): # add the sequence of all features
# analysing the variations for all the mrna :
for mrna_id in mrna_var.keys():
+ print("analysis of the variations in the mRNA",mrna_id,":\n")
cds_var=mrna_var[mrna_id]
for cds_id in cds_var:
cds=Features[cds_id]
- print("analysis of the variations in the CDS",cds_id,":\n")
+ print("\nCDS",cds_id,":")
frameshift=0
for index, var in enumerate(cds_var[cds_id]): #Â for each variation in the current cds :
type_var=var[8]
@@ -280,7 +281,7 @@ for mrna_id in mrna_var.keys():
else:
length_alt=len(var[10])
- print("variation",index+1, ":")
+ print("\nvariation",index+1, ":")
if posVar[0]<3:
print("variation of the start codon, mRNA most likely wont be translated")
@@ -354,5 +355,3 @@ for mrna_id in mrna_var.keys():
# possible that it prints too many variations : for ex if we have a snp on the first and the last base of a codon,
# while printing the effect of the first snp we aso use the second one.
- print("\n")
-
--
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