cruise.toml

[global]
author         = "jgrelet IRD March 2019 PIRATA-FR29 cruise"
debug          = false
echo           = true

[cruise]
cycleMesure    = "PIRATA-FR29"
plateforme     = "THALASSA"
callsign       = "FNFP"
institute      = "IRD"
timezone       = "GMT"
beginDate      = "01/03/2019"
endDate        = "04/04/2019"
pi             = "BOURLES"
creator        = "Jacques.Grelet@ird.fr"

[ctd]
cruisePrefix   = "fr29"
# profile name : fr29xxx
station = 'Station\s*:\s*\D*(\d*)'
stationPrefixLength  = 3
titleSummary  = "CTD profiles processed during PIRATA-FR29 cruise"
typeInstrument   = "SBE911+"
instrumentNumber  = "09P1263"
isHeader = '^[*#]'
isDevice       = [ '^\*\s+(Sea-Bird)','(\*END\*)' ]
latitude = ['Latitude\s*:\s*(\d+)\s+(\d+.\d+)\s+(\w)','NMEA Latitude\s*=\s*(\d+\s+\d+.\d+\s+\w)']
longitude = ['Longitude\s*:\s*(\d+)\s+(\d+.\d+)\s+(\w)','NMEA Longitude\s*=\s*(\d+\s+\d+.\d+\s+\w)']
date = 'Date\s*:\s*(\d+)/(\d+)/(\d+)'
hour = '[Heure|Hour]\s*:\s*(\d+)[:hH](\d+):(\d+)'
bottomDepth = 'Bottom Depth\s*:\s*(\d*\.?\d+?)\s*\S*'
operator = 'Operator\s*:\s*(.*)'
type = 'Type\s*:\s*(.*)'

split.ETDD = 2
split.PRES = 3
split.DEPTH = 4
split.TEMP = 5
split.PSAL = 18
split.DENS = 20
split.SVEL = 22
split.DOX2 = 16
split.FLU2 = 14
split.FLU3 = 15
split.TUR3 = 13
split.NAVG = 24

splitAll.ETDD = 2
splitAll.PRES = 3
splitAll.DEPH = 4
splitAll.TE01 = 5
splitAll.TE02 = 6
splitAll.CND1 = 7
splitAll.CND2 = 8
splitAll.DOV1 = 9
splitAll.DOV2 = 10
splitAll.DVT1 = 11
splitAll.DVT2 = 12
splitAll.TUR3 = 13
splitAll.FLU2 = 14
splitAll.FLU3 = 15
splitAll.DO12 = 16
splitAll.DO22 = 17
splitAll.PSA1 = 18
splitAll.PSA2 = 19
splitAll.DEN1 = 20
splitAll.DEN2 = 21
splitAll.SVEL = 22
splitAll.NAVG = 24

[btl]
typeInstrument           = "SBE32 standard 24 Niskin bottles"
instrumentNumber             = "unknown"
titleSummary   = "Water sample during PIRATA-FR29 cruise with 20 levels"
comment        = "CTD bottles water sampling with temperature, salinity and oxygen from primary and secondary sensors"
split = ' BOTL,1,month,2,day,3,year,4,PSA1,5,PSA2,6,DO11,7,DO12,8,DO21,9,DO22,10,Potemp090C,11,Potemp190C,12,ETDD,13,PRES,14,DEPH,15,TE01,16,TE02,17,CND1,18,CND2,19,DOV1,20,DOV2,21,DVT1,22,DVT2,23,TUR3,24,FLU2,25'