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Commit 8f56122e authored by jacques.grelet_ird.fr's avatar jacques.grelet_ird.fr
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creation dynamique de la structure tsg a partir des objets tsg_nc 

Renumerotation des codes de qualités suivant le document GOSUD 1.4
Ajout d'un code (6), HARBOUR
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tsg_util/tsg_initialisation.m
+ 166
− 117
View file @ 8f56122e
...@@ -14,11 +14,17 @@ function tsg_initialisation(hTsgGUI, hQcCmenu) ...@@ -14,11 +14,17 @@ function tsg_initialisation(hTsgGUI, hQcCmenu)
% Constants for NetCDF DATA FORMAT TSG % Constants for NetCDF DATA FORMAT TSG
% ------------------------------------------------------------------------- % -------------------------------------------------------------------------
% netcdf file version % netcdf file version
% -------------------
FORMAT_VERSION = '1.4'; FORMAT_VERSION = '1.4';
% date of reference for julian days, is 1st january 1950 % date of reference for julian days, is 1st january 1950
% ------------------------------------------------------
REFERENCE_DATE_TIME = '19500101000000'; REFERENCE_DATE_TIME = '19500101000000';
% get actual date
% ---------------
date = datestr(now,30);
% ------------------------------------------------------------------------- % -------------------------------------------------------------------------
% Levitus field for climatology % Levitus field for climatology
% ------------------------------------------------------------------------- % -------------------------------------------------------------------------
...@@ -41,12 +47,29 @@ tsg.qc.Color.GOOD = 'b'; ...@@ -41,12 +47,29 @@ tsg.qc.Color.GOOD = 'b';
tsg.qc.Color.PROBABLY_GOOD = 'g'; tsg.qc.Color.PROBABLY_GOOD = 'g';
tsg.qc.Color.PROBABLY_BAD = 'm'; tsg.qc.Color.PROBABLY_BAD = 'm';
tsg.qc.Color.BAD = 'r'; tsg.qc.Color.BAD = 'r';
tsg.qc.Color.HARBOUR = 'c';
tsg.qc.Code.NO_CONTROL = 1; % Quality flags reference table, see GOSUD, DATA FORMAT TSG V1.4, table 4
tsg.qc.Code.GOOD = 2; % -----------------------------------------------------------------------
tsg.qc.Code.PROBABLY_GOOD = 3; % Code Meaning
tsg.qc.Code.PROBABLY_BAD = 4; %
tsg.qc.Code.BAD = 5; % 0 No QC was performed
% 1 Good data
% 2 Probably good data
% 3 Bad data that are potentially correctable
% 4 Bad data
% 5 Value changed
% 6 Data acquired in harbour
% 7 Not used
% 8 Interpolated value
% 9 Missing value
tsg.qc.Code.NO_CONTROL = 0;
tsg.qc.Code.GOOD = 1;
tsg.qc.Code.PROBABLY_GOOD = 2;
tsg.qc.Code.PROBABLY_BAD = 3;
tsg.qc.Code.BAD = 4;
tsg.qc.Code.HARBOUR = 6;
tsg.qc.Code.ACTIVE = tsg.qc.Code.NO_CONTROL; tsg.qc.Code.ACTIVE = tsg.qc.Code.NO_CONTROL;
tsg.qc.Color.ACTIVE = tsg.qc.Color.NO_CONTROL; tsg.qc.Color.ACTIVE = tsg.qc.Color.NO_CONTROL;
...@@ -75,130 +98,156 @@ cst.COR_TIME_WINDOWS = 10; ...@@ -75,130 +98,156 @@ cst.COR_TIME_WINDOWS = 10;
% -------------------------------------------------- % --------------------------------------------------
setappdata( hTsgGUI, 'constante', cst); setappdata( hTsgGUI, 'constante', cst);
% Get variables list codes from class tsg_nc with file 'tsg_ncvar.csv'
% --------------------------------------------------------------------
ncv = tsg_nc('tsg_ncvar.csv');
ncv_keys = keys(ncv);
% Get global attributes list from class tsg_nc with file 'tsg_ncattr.csv'
% -----------------------------------------------------------------------
nca = tsg_nc('tsg_ncattr.csv');
nca_keys = keys(nca);
% store tsg NetCDF data structure % store tsg NetCDF data structure
% ------------------------------- % -------------------------------
% get actual date
date = datestr(now,30);
% dimensions % dimensions
tsg.DAYD = 0; % ----------
tsg.DAYD_WS = 0; tsg.DAYD = [];
tsg.DAYD_EXT = 0; tsg.DAYD_WS = [];
tsg.DAYD_EXT = [];
% initialise tsg structure from tsg_nc objects
% --------------------------------------------
% variables
% ---------
for i=1:numel(ncv_keys)
variable = ncv_keys{i};
tsg.(variable) = [];
end
% globals attributes % globals attributes
tsg.PLATFORM_NAME = ''; % ------------------
tsg.SHIP_CALL_SIGN = ''; for i=1:numel(nca_keys)
tsg.SHIP_MMSI = ''; global_att = nca_keys{i};
tsg.TSG_TYPE = ''; tsg.(global_att) = '';
tsg.TSG_NUMBER = ''; end
tsg.TINT_TYPE = '';
tsg.TINT_NUMBER = ''; % tsg.PLATFORM_NAME = '';
tsg.DATA_TYPE = ''; % tsg.SHIP_CALL_SIGN = '';
tsg.DATA_MODE = ''; % tsg.SHIP_MMSI = '';
tsg.SAMPLING_PERIOD = ''; % tsg.TSG_TYPE = '';
tsg.PROCESSING_STATUS = ''; % tsg.TSG_NUMBER = '';
tsg.DATE_START = ''; % tsg.TINT_TYPE = '';
tsg.DATE_END = ''; % tsg.TINT_NUMBER = '';
tsg.SOUTH_LATX = ''; % tsg.DATA_TYPE = '';
tsg.NORTH_LATX = ''; % tsg.DATA_MODE = '';
tsg.WEST_LONX = ''; % tsg.SAMPLING_PERIOD = '';
tsg.EAST_LONX = ''; % tsg.PROCESSING_STATUS = '';
% tsg.DATE_START = '';
% tsg.DATE_END = '';
% tsg.SOUTH_LATX = '';
% tsg.NORTH_LATX = '';
% tsg.WEST_LONX = '';
% tsg.EAST_LONX = '';
tsg.FORMAT_VERSION = FORMAT_VERSION; tsg.FORMAT_VERSION = FORMAT_VERSION;
tsg.DATE_CREATION = [date(1:8) date(10:15)]; tsg.DATE_CREATION = [date(1:8) date(10:15)];
tsg.DATE_UPDATE = tsg.DATE_CREATION; tsg.DATE_UPDATE = tsg.DATE_CREATION;
tsg.DATA_RESTRICTIONS = ''; tsg.REFERENCE_DATE_TIME = REFERENCE_DATE_TIME;
tsg.CITATION = ''; % tsg.DATA_RESTRICTIONS = '';
tsg.COMMENT = ''; % tsg.CITATION = '';
tsg.PROJECT_NAME = ''; % tsg.COMMENT = '';
tsg.PI_NAME = ''; % tsg.PROJECT_NAME = '';
tsg.DATA_CENTRE = ''; % tsg.PI_NAME = '';
tsg.DATA_ACQUISITION = ''; % tsg.DATA_CENTRE = '';
tsg.PROCESSING_CENTRE = ''; % tsg.DATA_ACQUISITION = '';
tsg.PROCESSING_STATES = ''; % tsg.PROCESSING_CENTRE = '';
% tsg.PROCESSING_STATES = '';
% variables describing TSG installation (Salinity, SSPS et Jacket % variables describing TSG installation (Salinity, SSPS et Jacket
% Temperature SSJT) % Temperature SSJT)
tsg.SSPS_DEPH = 0; % tsg.SSPS_DEPH = [];
tsg.SSPS_DEPH_MIN = 0; % tsg.SSPS_DEPH_MIN = [];
tsg.SSPS_DEPH_MAX = 0; % tsg.SSPS_DEPH_MAX = [];
tsg.CNDC_CALCOEF = [99999 99999 99999 99999 99999]; % tsg.CNDC_CALCOEF = [];
tsg.CNDC_LINCOEF = [99999 99999]; % tsg.CNDC_LINCOEF = [];
tsg.SSJT_CALCOEF = [99999 99999 99999 99999 99999]; % tsg.SSJT_CALCOEF = [];
tsg.SSJT_LINCOEF = [99999 99999]; % tsg.SSJT_LINCOEF = [];
%
% variables describing Temperature sensor at intake (SSJT) installation % % variables describing Temperature sensor at intake (SSJT) installation
tsg.SSTP_DEPH = 0; % tsg.SSTP_DEPH = [];
tsg.SSTP_DEPH_MIN = 0; % tsg.SSTP_DEPH_MIN = [];
tsg.SSTP_DEPH_MAX = 0; % tsg.SSTP_DEPH_MAX = [];
tsg.SSTP_CALCOEF = [99999 99999 99999 99999 99999]; % tsg.SSTP_CALCOEF = [];
tsg.SSTP_LINCOEF = [99999 99999]; % tsg.SSTP_LINCOEF = [];
%
% Coordinates % % Coordinates
tsg.DATE = []; % tsg.DATE = [];
tsg.DAYD = []; % tsg.DAYD = [];
tsg.LATX = []; % tsg.LATX = [];
tsg.LONX = []; % tsg.LONX = [];
tsg.POSITION_QC = []; % tsg.POSITION_QC = [];
tsg.SPDC = []; % tsg.SPDC = [];
tsg.REFERENCE_DATE_TIME = REFERENCE_DATE_TIME; % tsg.REFERENCE_DATE_TIME = REFERENCE_DATE_TIME;
%
% variables % % variables
tsg.PRES = []; % tsg.PRES = [];
tsg.SSJT = []; % tsg.SSJT = [];
tsg.SSJT_STD = []; % tsg.SSJT_STD = [];
tsg.SSJT_CAL = []; % tsg.SSJT_CAL = [];
tsg.SSJT_ADJUSTED = []; % tsg.SSJT_ADJUSTED = [];
tsg.SSJT_ADJUSTED_ERROR = []; % tsg.SSJT_ADJUSTED_ERROR = [];
tsg.SSJT_ADJUSTED_QC = []; % tsg.SSJT_ADJUSTED_QC = [];
tsg.SSJT_ADJUSTED_HIST = []; % tsg.SSJT_ADJUSTED_HIST = [];
tsg.CNDC = []; % tsg.CNDC = [];
tsg.CNDC_STD = []; % tsg.CNDC_STD = [];
tsg.CNDC_CAL = []; % tsg.CNDC_CAL = [];
%
%% a verifier !!!!! % %% a verifier !!!!!
tsg.SSTP = []; % tsg.SSTP = [];
tsg.SSTP_QC = []; % tsg.SSTP_QC = [];
tsg.SSTP_CAL = []; % tsg.SSTP_CAL = [];
tsg.SSTP_ADJUSTED = []; % tsg.SSTP_ADJUSTED = [];
tsg.SSTP_ADJUSTED_ERROR = []; % tsg.SSTP_ADJUSTED_ERROR = [];
tsg.SSTP_ADJUSTED_QC = []; % tsg.SSTP_ADJUSTED_QC = [];
tsg.SSTP_ADJUSTED_HIST = []; % tsg.SSTP_ADJUSTED_HIST = [];
%
tsg.SSPS = []; % tsg.SSPS = [];
tsg.SSPS_QC = []; % tsg.SSPS_QC = [];
tsg.SSPS_CAL = []; % tsg.SSPS_CAL = [];
tsg.SSPS_ADJUSTED = []; % tsg.SSPS_ADJUSTED = [];
tsg.SSPS_ADJUSTED_ERROR = []; % tsg.SSPS_ADJUSTED_ERROR = [];
tsg.SSPS_ADJUSTED_QC = []; % tsg.SSPS_ADJUSTED_QC = [];
tsg.SSPS_ADJUSTED_HIST = []; % tsg.SSPS_ADJUSTED_HIST = [];
%
% Water Sample Coordinates % % Water Sample Coordinates
tsg.DATE_WS = []; % tsg.DATE_WS = [];
tsg.DAYD_WS = []; % tsg.DAYD_WS = [];
tsg.LATX_WS = []; % tsg.LATX_WS = [];
tsg.LONX_WS = []; % tsg.LONX_WS = [];
%
% Water Sample variables % % Water Sample variables
tsg.SSPS_WS = []; % tsg.SSPS_WS = [];
tsg.SSPS_WS_QC = []; % tsg.SSPS_WS_QC = [];
%tsg.SSPS_WS_DIF = []; % %tsg.SSPS_WS_DIF = [];
%tsg.SSPS_WS_SMOOTH = []; % a verifier % %tsg.SSPS_WS_SMOOTH = []; % a verifier
tsg.SSPS_WS_ANALDATE = []; % tsg.SSPS_WS_ANALDATE = [];
tsg.SSPS_WS_BOTTLE = []; % tsg.SSPS_WS_BOTTLE = [];
%
% External data coordinates % % External data coordinates
tsg.DATE_EXT = []; % tsg.DATE_EXT = [];
tsg.DAYD_EXT = []; % tsg.DAYD_EXT = [];
tsg.LATX_EXT = []; % tsg.LATX_EXT = [];
tsg.LONX_EXT = []; % tsg.LONX_EXT = [];
%
% External data variables % % External data variables
tsg.SSTP_EXT = []; % tsg.SSTP_EXT = [];
tsg.SSTP_EXT_QC = []; % tsg.SSTP_EXT_QC = [];
tsg.SSTP_EXT_TYPE = []; % tsg.SSTP_EXT_TYPE = [];
tsg.SSPS_EXT = []; % tsg.SSPS_EXT = [];
tsg.SSPS_EXT_QC = []; % tsg.SSPS_EXT_QC = [];
tsg.SSPS_EXT_TYPE = []; % tsg.SSPS_EXT_TYPE = [];
% Save structure tsg % Save structure tsg
setappdata( hTsgGUI, 'tsg_data', tsg); setappdata( hTsgGUI, 'tsg_data', tsg);
......
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