From 8f56122e003441da11a3b0208f76062469da36e7 Mon Sep 17 00:00:00 2001
From: Jacques Grelet <jacques.grelet@ird.fr>
Date: Wed, 16 Jan 2008 16:57:51 +0000
Subject: [PATCH] =?UTF-8?q?creation=20dynamique=20de=20la=20structure=20ts?=
=?UTF-8?q?g=20a=20partir=20des=20objets=20tsg=5Fnc=20Renumerotation=20des?=
=?UTF-8?q?=20codes=20de=20qualit=C3=A9s=20suivant=20le=20document=20GOSUD?=
=?UTF-8?q?=201.4=20Ajout=20d'un=20code=20(6),=20HARBOUR?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit
---
tsg_util/tsg_initialisation.m | 283 ++++++++++++++++++++--------------
1 file changed, 166 insertions(+), 117 deletions(-)
diff --git a/tsg_util/tsg_initialisation.m b/tsg_util/tsg_initialisation.m
index a9ee58f..5247147 100644
--- a/tsg_util/tsg_initialisation.m
+++ b/tsg_util/tsg_initialisation.m
@@ -14,11 +14,17 @@ function tsg_initialisation(hTsgGUI, hQcCmenu)
% Constants for NetCDF DATA FORMAT TSG
% -------------------------------------------------------------------------
% netcdf file version
+% -------------------
FORMAT_VERSION = '1.4';
% date of reference for julian days, is 1st january 1950
+% ------------------------------------------------------
REFERENCE_DATE_TIME = '19500101000000';
+% get actual date
+% ---------------
+date = datestr(now,30);
+
% -------------------------------------------------------------------------
% Levitus field for climatology
% -------------------------------------------------------------------------
@@ -41,12 +47,29 @@ tsg.qc.Color.GOOD = 'b';
tsg.qc.Color.PROBABLY_GOOD = 'g';
tsg.qc.Color.PROBABLY_BAD = 'm';
tsg.qc.Color.BAD = 'r';
+tsg.qc.Color.HARBOUR = 'c';
-tsg.qc.Code.NO_CONTROL = 1;
-tsg.qc.Code.GOOD = 2;
-tsg.qc.Code.PROBABLY_GOOD = 3;
-tsg.qc.Code.PROBABLY_BAD = 4;
-tsg.qc.Code.BAD = 5;
+% Quality flags reference table, see GOSUD, DATA FORMAT TSG V1.4, table 4
+% -----------------------------------------------------------------------
+% Code Meaning
+%
+% 0 No QC was performed
+% 1 Good data
+% 2 Probably good data
+% 3 Bad data that are potentially correctable
+% 4 Bad data
+% 5 Value changed
+% 6 Data acquired in harbour
+% 7 Not used
+% 8 Interpolated value
+% 9 Missing value
+
+tsg.qc.Code.NO_CONTROL = 0;
+tsg.qc.Code.GOOD = 1;
+tsg.qc.Code.PROBABLY_GOOD = 2;
+tsg.qc.Code.PROBABLY_BAD = 3;
+tsg.qc.Code.BAD = 4;
+tsg.qc.Code.HARBOUR = 6;
tsg.qc.Code.ACTIVE = tsg.qc.Code.NO_CONTROL;
tsg.qc.Color.ACTIVE = tsg.qc.Color.NO_CONTROL;
@@ -75,130 +98,156 @@ cst.COR_TIME_WINDOWS = 10;
% --------------------------------------------------
setappdata( hTsgGUI, 'constante', cst);
+% Get variables list codes from class tsg_nc with file 'tsg_ncvar.csv'
+% --------------------------------------------------------------------
+ncv = tsg_nc('tsg_ncvar.csv');
+ncv_keys = keys(ncv);
+
+% Get global attributes list from class tsg_nc with file 'tsg_ncattr.csv'
+% -----------------------------------------------------------------------
+nca = tsg_nc('tsg_ncattr.csv');
+nca_keys = keys(nca);
+
% store tsg NetCDF data structure
% -------------------------------
-% get actual date
-date = datestr(now,30);
% dimensions
-tsg.DAYD = 0;
-tsg.DAYD_WS = 0;
-tsg.DAYD_EXT = 0;
+% ----------
+tsg.DAYD = [];
+tsg.DAYD_WS = [];
+tsg.DAYD_EXT = [];
+
+% initialise tsg structure from tsg_nc objects
+% --------------------------------------------
+
+% variables
+% ---------
+for i=1:numel(ncv_keys)
+ variable = ncv_keys{i};
+ tsg.(variable) = [];
+end
% globals attributes
-tsg.PLATFORM_NAME = '';
-tsg.SHIP_CALL_SIGN = '';
-tsg.SHIP_MMSI = '';
-tsg.TSG_TYPE = '';
-tsg.TSG_NUMBER = '';
-tsg.TINT_TYPE = '';
-tsg.TINT_NUMBER = '';
-tsg.DATA_TYPE = '';
-tsg.DATA_MODE = '';
-tsg.SAMPLING_PERIOD = '';
-tsg.PROCESSING_STATUS = '';
-tsg.DATE_START = '';
-tsg.DATE_END = '';
-tsg.SOUTH_LATX = '';
-tsg.NORTH_LATX = '';
-tsg.WEST_LONX = '';
-tsg.EAST_LONX = '';
+% ------------------
+for i=1:numel(nca_keys)
+ global_att = nca_keys{i};
+ tsg.(global_att) = '';
+end
+
+% tsg.PLATFORM_NAME = '';
+% tsg.SHIP_CALL_SIGN = '';
+% tsg.SHIP_MMSI = '';
+% tsg.TSG_TYPE = '';
+% tsg.TSG_NUMBER = '';
+% tsg.TINT_TYPE = '';
+% tsg.TINT_NUMBER = '';
+% tsg.DATA_TYPE = '';
+% tsg.DATA_MODE = '';
+% tsg.SAMPLING_PERIOD = '';
+% tsg.PROCESSING_STATUS = '';
+% tsg.DATE_START = '';
+% tsg.DATE_END = '';
+% tsg.SOUTH_LATX = '';
+% tsg.NORTH_LATX = '';
+% tsg.WEST_LONX = '';
+% tsg.EAST_LONX = '';
tsg.FORMAT_VERSION = FORMAT_VERSION;
tsg.DATE_CREATION = [date(1:8) date(10:15)];
tsg.DATE_UPDATE = tsg.DATE_CREATION;
-tsg.DATA_RESTRICTIONS = '';
-tsg.CITATION = '';
-tsg.COMMENT = '';
-tsg.PROJECT_NAME = '';
-tsg.PI_NAME = '';
-tsg.DATA_CENTRE = '';
-tsg.DATA_ACQUISITION = '';
-tsg.PROCESSING_CENTRE = '';
-tsg.PROCESSING_STATES = '';
+tsg.REFERENCE_DATE_TIME = REFERENCE_DATE_TIME;
+% tsg.DATA_RESTRICTIONS = '';
+% tsg.CITATION = '';
+% tsg.COMMENT = '';
+% tsg.PROJECT_NAME = '';
+% tsg.PI_NAME = '';
+% tsg.DATA_CENTRE = '';
+% tsg.DATA_ACQUISITION = '';
+% tsg.PROCESSING_CENTRE = '';
+% tsg.PROCESSING_STATES = '';
% variables describing TSG installation (Salinity, SSPS et Jacket
% Temperature SSJT)
-tsg.SSPS_DEPH = 0;
-tsg.SSPS_DEPH_MIN = 0;
-tsg.SSPS_DEPH_MAX = 0;
-tsg.CNDC_CALCOEF = [99999 99999 99999 99999 99999];
-tsg.CNDC_LINCOEF = [99999 99999];
-tsg.SSJT_CALCOEF = [99999 99999 99999 99999 99999];
-tsg.SSJT_LINCOEF = [99999 99999];
-
-% variables describing Temperature sensor at intake (SSJT) installation
-tsg.SSTP_DEPH = 0;
-tsg.SSTP_DEPH_MIN = 0;
-tsg.SSTP_DEPH_MAX = 0;
-tsg.SSTP_CALCOEF = [99999 99999 99999 99999 99999];
-tsg.SSTP_LINCOEF = [99999 99999];
-
-% Coordinates
-tsg.DATE = [];
-tsg.DAYD = [];
-tsg.LATX = [];
-tsg.LONX = [];
-tsg.POSITION_QC = [];
-tsg.SPDC = [];
-tsg.REFERENCE_DATE_TIME = REFERENCE_DATE_TIME;
-
-% variables
-tsg.PRES = [];
-tsg.SSJT = [];
-tsg.SSJT_STD = [];
-tsg.SSJT_CAL = [];
-tsg.SSJT_ADJUSTED = [];
-tsg.SSJT_ADJUSTED_ERROR = [];
-tsg.SSJT_ADJUSTED_QC = [];
-tsg.SSJT_ADJUSTED_HIST = [];
-tsg.CNDC = [];
-tsg.CNDC_STD = [];
-tsg.CNDC_CAL = [];
-
-%% a verifier !!!!!
-tsg.SSTP = [];
-tsg.SSTP_QC = [];
-tsg.SSTP_CAL = [];
-tsg.SSTP_ADJUSTED = [];
-tsg.SSTP_ADJUSTED_ERROR = [];
-tsg.SSTP_ADJUSTED_QC = [];
-tsg.SSTP_ADJUSTED_HIST = [];
-
-tsg.SSPS = [];
-tsg.SSPS_QC = [];
-tsg.SSPS_CAL = [];
-tsg.SSPS_ADJUSTED = [];
-tsg.SSPS_ADJUSTED_ERROR = [];
-tsg.SSPS_ADJUSTED_QC = [];
-tsg.SSPS_ADJUSTED_HIST = [];
-
-% Water Sample Coordinates
-tsg.DATE_WS = [];
-tsg.DAYD_WS = [];
-tsg.LATX_WS = [];
-tsg.LONX_WS = [];
-
-% Water Sample variables
-tsg.SSPS_WS = [];
-tsg.SSPS_WS_QC = [];
-%tsg.SSPS_WS_DIF = [];
-%tsg.SSPS_WS_SMOOTH = []; % a verifier
-tsg.SSPS_WS_ANALDATE = [];
-tsg.SSPS_WS_BOTTLE = [];
-
-% External data coordinates
-tsg.DATE_EXT = [];
-tsg.DAYD_EXT = [];
-tsg.LATX_EXT = [];
-tsg.LONX_EXT = [];
-
-% External data variables
-tsg.SSTP_EXT = [];
-tsg.SSTP_EXT_QC = [];
-tsg.SSTP_EXT_TYPE = [];
-tsg.SSPS_EXT = [];
-tsg.SSPS_EXT_QC = [];
-tsg.SSPS_EXT_TYPE = [];
+% tsg.SSPS_DEPH = [];
+% tsg.SSPS_DEPH_MIN = [];
+% tsg.SSPS_DEPH_MAX = [];
+% tsg.CNDC_CALCOEF = [];
+% tsg.CNDC_LINCOEF = [];
+% tsg.SSJT_CALCOEF = [];
+% tsg.SSJT_LINCOEF = [];
+%
+% % variables describing Temperature sensor at intake (SSJT) installation
+% tsg.SSTP_DEPH = [];
+% tsg.SSTP_DEPH_MIN = [];
+% tsg.SSTP_DEPH_MAX = [];
+% tsg.SSTP_CALCOEF = [];
+% tsg.SSTP_LINCOEF = [];
+%
+% % Coordinates
+% tsg.DATE = [];
+% tsg.DAYD = [];
+% tsg.LATX = [];
+% tsg.LONX = [];
+% tsg.POSITION_QC = [];
+% tsg.SPDC = [];
+% tsg.REFERENCE_DATE_TIME = REFERENCE_DATE_TIME;
+%
+% % variables
+% tsg.PRES = [];
+% tsg.SSJT = [];
+% tsg.SSJT_STD = [];
+% tsg.SSJT_CAL = [];
+% tsg.SSJT_ADJUSTED = [];
+% tsg.SSJT_ADJUSTED_ERROR = [];
+% tsg.SSJT_ADJUSTED_QC = [];
+% tsg.SSJT_ADJUSTED_HIST = [];
+% tsg.CNDC = [];
+% tsg.CNDC_STD = [];
+% tsg.CNDC_CAL = [];
+%
+% %% a verifier !!!!!
+% tsg.SSTP = [];
+% tsg.SSTP_QC = [];
+% tsg.SSTP_CAL = [];
+% tsg.SSTP_ADJUSTED = [];
+% tsg.SSTP_ADJUSTED_ERROR = [];
+% tsg.SSTP_ADJUSTED_QC = [];
+% tsg.SSTP_ADJUSTED_HIST = [];
+%
+% tsg.SSPS = [];
+% tsg.SSPS_QC = [];
+% tsg.SSPS_CAL = [];
+% tsg.SSPS_ADJUSTED = [];
+% tsg.SSPS_ADJUSTED_ERROR = [];
+% tsg.SSPS_ADJUSTED_QC = [];
+% tsg.SSPS_ADJUSTED_HIST = [];
+%
+% % Water Sample Coordinates
+% tsg.DATE_WS = [];
+% tsg.DAYD_WS = [];
+% tsg.LATX_WS = [];
+% tsg.LONX_WS = [];
+%
+% % Water Sample variables
+% tsg.SSPS_WS = [];
+% tsg.SSPS_WS_QC = [];
+% %tsg.SSPS_WS_DIF = [];
+% %tsg.SSPS_WS_SMOOTH = []; % a verifier
+% tsg.SSPS_WS_ANALDATE = [];
+% tsg.SSPS_WS_BOTTLE = [];
+%
+% % External data coordinates
+% tsg.DATE_EXT = [];
+% tsg.DAYD_EXT = [];
+% tsg.LATX_EXT = [];
+% tsg.LONX_EXT = [];
+%
+% % External data variables
+% tsg.SSTP_EXT = [];
+% tsg.SSTP_EXT_QC = [];
+% tsg.SSTP_EXT_TYPE = [];
+% tsg.SSPS_EXT = [];
+% tsg.SSPS_EXT_QC = [];
+% tsg.SSPS_EXT_TYPE = [];
% Save structure tsg
setappdata( hTsgGUI, 'tsg_data', tsg);
--
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