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% tsgqc_GUI
% TSG (Thermosalinograph) Quality Control software
%
% $Id$
%
%% COPYRIGHT & LICENSE
% Copyright 2007 - IRD US191, all rights reserved.
%
% This file is part of tsgqc_GUI.
%
% Datagui is free software; you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation; either version 2 of the License, or
% (at your option) any later version.
%
% tsgqc_GUI is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
% GNU General Public License for more details.
%
% You should have received a copy of the GNU General Public License
% along with Datagui; if not, write to the Free Software
% Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
%% Initialization tasks
% ********************

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% Clear Command Window display, giving up a "clean screen."
% ---------------------------------------------------------
clc;

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% Define global variable VERSION number
% -------------------------------------
global VERSION
VERSION = '0.2a';
% reset userdata property of root Matlab object if it is not empty
% ----------------------------------------------------------------
if ~isempty(get(0,'Userdata'))
set(0, 'userdata', []);
end

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% Find program directory.
% functions (icons) should be store at a lower level
% add directories to Matlab search path, works on UNIX
% and Windows host
% ---------------------------------------------------
tsgqcname = mfilename;
fulltsgqcname = mfilename('fullpath');
DEFAULT_PATH_FILE = strrep(fulltsgqcname, tsgqcname, '') ;
p = [pathsep,...
DEFAULT_PATH_FILE,[filesep 'tsg_util' pathsep],...
DEFAULT_PATH_FILE,[filesep 'tsg_data' pathsep],...
DEFAULT_PATH_FILE,[filesep 'tsg_io' pathsep]
];
addpath( p, '-END' );
rehash;

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% get screen dimensions (pixels)
% ------------------------------
set(0,'Units','pixels');
screenSize = get(0,'ScreenSize');
% define default font size based on screen resolution
% ---------------------------------------------------
if screenSize(3) <= 1024

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end

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% Screen limits for the GUI
% -------------------------
set(0,'Units','normalized');
guiLimits = get(0,'ScreenSize');
guiLimits(1) = guiLimits(1) + 0.01;
guiLimits(2) = guiLimits(2) + 0.05;
guiLimits(3) = guiLimits(3) - 0.02;
guiLimits(4) = guiLimits(4) - 0.15;

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%% Main GUI
% Create and then hide the GUI as it is being constructed.

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% --------------------------------------------------------
hMainFig = figure(...
'Name', 'TSG Validation', ...
'NumberTitle', 'off', ...
'Resize', 'on', ...
'Menubar','none', ...
'Toolbar', 'none', ...
'UserData', 'ButtonMotionOff', ...
'WindowButtonMotionFcn', @MouseMotion, ...
'CloseRequestFcn', @QuitMenuCallback,...

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'HandleVisibility','callback',...
'Visible','on',...

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'Tag','TAG_TSG-QC_GUI',...

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'Units', 'normalized',...
'Position',guiLimits, ...
'Color', get( 0, 'DefaultUIControlBackgroundColor' ));

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% Initialize tsg structure
% ------------------------
%tsg_initialisation(hMainFig)
%% Initialize tsg structure with tsg_preference function
% -----------------------------------------------------
tsg_preferences(hMainFig, tsgqcname);
% get root struct from root object
% --------------------------------
root = get(0,'Userdata');

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% Retrieve named application data
% -------------------------------
tsg = getappdata( hMainFig, 'tsg_data');
%% Menu File
% -----------------------------------------------------------------------

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hFileMenu = uimenu(...
'Parent', hMainFig,...
'HandleVisibility','callback',...
'Label', 'File');
hOpenMenu = uimenu(...
'Parent', hFileMenu,...
'Label','Open',...
'Accelerator','O',...
'HandleVisibility','callback',...
'UserData', 'off',...

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'Callback', @OpenMenuCallback);
hSaveMenu = uimenu(...
'Parent', hFileMenu,...
'Label','Save',...
'Accelerator','S',...
'Enable', 'off',...
'UserData', 'off',...

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'HandleVisibility','callback',...
'Callback',@SaveMenuCallback);
hQuitMenu = uimenu(...
'Parent',hFileMenu,...
'Label','Quit',...
'Separator','on',...
'Accelerator','Q',...
'HandleVisibility','callback',...
'Callback',@QuitMenuCallback);

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%% Menu Edit with Undo/Redo submenu
% ---------------------------------
hEditMenu = uimenu(hMainFig,'Label','Edit');
uimenu(hEditMenu,'Label','Undo',...
'Accelerator','Z',...
'Tag','UIMENU_UNDO',...
'Enable', 'off',...
'Callback',@UndoMenuCallback);
uimenu(hEditMenu,'Label','Redo',...
'Accelerator','R',...
'Tag','UIMENU_REDO',...
'Enable', 'off',...
'Callback',@RedoMenuCallback);

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%% Menu Climatology with Annual/Seasonal/Monthly submenu
% --------------------------------------------------------
% define structure s stored in userdata
% -------------------------------------
s = struct('type', 'annual', 'time', 1);
hClimatoMenu = uimenu(hMainFig,'Label','Climatology', ...
'Tag', 'TAG_UIMENU_CLIMATO_MAIN', ...
'UserData', s);

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% by defautl at startup, select climatology to annual
% ---------------------------------------------------
uimenu(hClimatoMenu,'Label','Annual',...

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'Checked','on',...

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'Tag','TAG_UIMENU_CLIMATO_ANNUAL',...
'Enable', 'on',...
'Callback', {@ClimatoSelectMenuCallback, 'annual', 1});
% declare top-level seasonal menu
% -------------------------------
hClimatoSeasonalMenu = uimenu(hClimatoMenu,'Label','Seasonal');
% declare label for seasonal submenu
% ----------------------------------
label = {'jan-feb-mar','apr-may-jun','jul-aug-sept','oct-nov-dec'};
% loop over the four submenu
% --------------------------
for i=1:4
uimenu(hClimatoSeasonalMenu,'Label',label{i},...
'Checked','off',...
'Tag',['TAG_UIMENU_CLIMATO_SEASONAL_' i],...
'Enable', 'on',...
'Callback',{@ClimatoSelectMenuCallback, 'seasonal', i});
end
% declare top-level monthly menu

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% -------------------------------
hClimatoMonthlyMenu = uimenu(hClimatoMenu,'Label','Monthly');
% declare label for monthly submenu
% ----------------------------------
label = {'january','february','march','april','may','june','july','august',...
'september','october','november','december'};
% loop over the four submenu
% --------------------------
for i=1:12
uimenu(hClimatoMonthlyMenu,'Label',label{i},...
'Checked','off',...
'Tag',['TAG_UIMENU_CLIMATO_MONTHLY_' i],...
'Enable', 'on',...

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'Callback',{@ClimatoSelectMenuCallback, 'monthly', i});
end
%% Menu Option with Preferences submenu
% --------------------------------------------------------
hOptionMenu = uimenu(hMainFig,'Label','Option');
uimenu(hOptionMenu,'Label','Preferences',...
'Checked', root.preference.autoload,...

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'Tag','TAG_UIMENU_OPTION_PREFERENCES',...

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'Callback', {@PreferencesMenuCallback});
%% Toolbar pushbuttons
% -----------------------------------------------------------------------

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hToolbar = uitoolbar(... % Toolbar for Open and Print buttons
'Parent',hMainFig, ...

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'HandleVisibility','on');

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hOpenPushtool = uipushtool(... % Opendoc toolbar button
'Parent',hToolbar,...
'TooltipString','Open file',...
'CData', iconRead(fullfile(matlabroot, ...
'/toolbox/matlab/icons/opendoc.mat')),...
'HandleVisibility','on', ...

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'Tag','PUSHTOOL_OPEN',...
'UserData', 'off',...
'Enable', 'on',...
'ClickedCallback', @OpenMenuCallback);
hSavePushtool = uipushtool(... % Open Save toolbar button
'Parent',hToolbar,...
'TooltipString','Save NetCDF file',...
'CData',iconRead( ...
[DEFAULT_PATH_FILE 'tsg_icon' filesep 'savedoc.mat']),...
'HandleVisibility','on', ...

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'Tag','PUSHTOOL_SAVE',...
'Enable', 'off',...
'ClickedCallback', @SaveMenuCallback);

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hZoomToggletool = uitoggletool(... % Open Zoom toolbar button

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'Parent',hToolbar,...
'Separator', 'on', ...
'TooltipString','Zoom',...
'CData', iconRead(fullfile(matlabroot, ...
'/toolbox/matlab/icons/zoom.mat')),...
'HandleVisibility','on', ...

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'Tag','PUSHTOOL_ZOOM',...
'Enable', 'off',...

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'OffCallback', @Zoom_OffMenuCallback,...
'ONCallback', @Zoom_OnMenuCallback);
hPanToggletool = uitoggletool(... % Open Pan toolbar button

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'Parent',hToolbar,...
'TooltipString','Pan',...
'CData',iconRead(fullfile(matlabroot, ...
'/toolbox/matlab/icons/pan.mat')),...

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'HandleVisibility','on', ...

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'Tag','PUSHTOOL_PAN',...
'Enable', 'off',...

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'OffCallback', @Pan_OffMenuCallback,...
'OnCallback', @Pan_OnMenuCallback);
hCalToggletool = uitoggletool(... % Open QC toolbar button
'Parent',hToolbar,...
'TooltipString','Calibration sensors',...
'Separator', 'on', ...
'CData',iconRead(...
[DEFAULT_PATH_FILE 'tsg_icon' filesep 'outils.mat']),...
'HandleVisibility','on', ...
'Tag','PUSHTOOL_CAL',...
'UserData', 'off',...
'Enable', 'off',...
'OffCallback', @Cal_OffMenuCallback,...
'OnCallback', @Cal_OnMenuCallback);
hQCToggletool = uitoggletool(... % Open QC toolbar button

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'Parent',hToolbar,...
'TooltipString','Validation codes',...
'CData',iconRead(...
[DEFAULT_PATH_FILE 'tsg_icon' filesep 'qcicon.mat']),...

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'HandleVisibility','on', ...

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'UserData', 'off',...
'Enable', 'off',...

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'OffCallback', @QC_OffMenuCallback,...
'OnCallback', @QC_OnMenuCallback);
hMapToggletool = uitoggletool(... % Open Map toolbar button

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'Parent',hToolbar,...
'TooltipString','Map and ship track',...
'Separator', 'on', ...
'CData',iconRead(...
[DEFAULT_PATH_FILE 'tsg_icon' filesep 'mapicon.mat']),...
'HandleVisibility','on', ...

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'Tag','PUSHTOOL_MAP',...
'UserData', 'off', ...
'Enable', 'off',...

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'OffCallback', @Map_OffMenuCallback,...
'OnCallback', @Map_OnMenuCallback);
hClimToggletool = uitoggletool(... % Open Climatology toolbar button

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'Parent',hToolbar,...
'TooltipString','Climatology',...
'Separator', 'on', ...
'CData',iconRead(...
[DEFAULT_PATH_FILE 'tsg_icon' filesep 'climicon.mat']),...
'HandleVisibility','on', ...

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'Tag','PUSHTOOL_CLIM',...
'UserData', 'off',...
'Enable', 'off',...

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'OffCallback', @Clim_OffMenuCallback,...
'OnCallback', @Clim_OnMenuCallback);
hBottleToggletool = uitoggletool(... % Correction module toolbar button

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'Parent',hToolbar,...
'TooltipString','Correct the SSS TSG data',...

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'Separator', 'on', ...
'CData',iconRead(...
[DEFAULT_PATH_FILE 'tsg_icon' filesep 'bottleicon.mat']),...
'HandleVisibility','on', ...
'UserData', 'off',...

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'Enable', 'off',...
'OffCallback', @Bottle_OffMenuCallback,...
'OnCallback', @Bottle_OnMenuCallback);
hTimelimitToggletool = uitoggletool(... % Select beginning of time series toolbar button
'TooltipString','Select time limit',...
[DEFAULT_PATH_FILE 'tsg_icon' filesep 'selecttime.mat']),...
'HandleVisibility','on', ...
'Tag', 'CORRECT_STARTTIME', ...
'UserData', 'off',...
'Enable', 'off',...
'OffCallback', @SelectTime_OffMenuCallback,...
'OnCallback', @SelectTime_OnMenuCallback);

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hHeaderPushtool = uipushtool(... % Open headerForm button
'Parent',hToolbar,...
'TooltipString','Fill the header form',...
'Separator', 'on', ...
'CData',iconRead(...
[DEFAULT_PATH_FILE 'tsg_icon' filesep 'hdricon.mat']),...
'HandleVisibility','on', ...

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'Tag','PUSHTOOL_HEADER',...
'Enable', 'off',...
'ClickedCallback', @HeaderMenuCallback);
%% Dynamic text area
% -----------------------------------------------------------------------
% Dynamic text area that displays the loaded filename, date, position and

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% salinity, temperature
% ------------------------------------------------------------------------

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% Create an uipanel

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% -----------------
hInfoPanel = uipanel( ...
'Parent', hMainFig, ...
'Units', 'normalized', ...
'BorderType', 'none',...
'Visible', 'on', ...
'Position',[.01, .96, .98, .04]);

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% Dynamic text area that displays the date
% ----------------------------------------
uicontrol(...

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'Parent', hInfoPanel, ...

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'Units', 'normalized', ...
'Style', 'Text', ...

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'Fontweight', 'bold', ...
'HorizontalAlignment', 'left', ...
'Position',[.01, .25, .04, .6], ...

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'String', 'File:');
hInfoFileText = uicontrol(...

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'Parent', hInfoPanel, ...

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'Style', 'text', ...

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'Visible','on',...
'Units', 'normalized',...
'HorizontalAlignment', 'left', ...
'String', 'No file loaded', ...
'Position', [.05, .25, .1, .6]);

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% Text area that displays the date
% --------------------------------
uicontrol(...

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'Parent', hInfoPanel, ...

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'Units', 'normalized', ...
'Style', 'Text', ...

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'Fontweight', 'bold', ...
'HorizontalAlignment', 'left', ...
'Position',[.15, .25, .04, .6], ...

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'String', 'Date:');
hInfoDateText = uicontrol(...

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'Parent', hInfoPanel, ...

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'Style', 'text', ...

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'Visible','on',...
'Units', 'normalized',...
'HorizontalAlignment', 'left', ...
'String', 'N/A', ...
'Position', [.20, .25, .13, .6]);

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% Text area that displays the latitude
% ------------------------------------
uicontrol(...

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'Parent', hInfoPanel, ...

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'Units', 'normalized', ...
'Style', 'Text', ...

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'Fontweight', 'bold', ...
'HorizontalAlignment', 'left', ...
'Position',[.33, .25, .06, .6], ...

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'String', 'Latitude:');
hInfoLatText = uicontrol(...

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'Parent', hInfoPanel, ...

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'Style', 'text', ...

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'Visible','on',...
'Units', 'normalized',...
'HorizontalAlignment', 'left', ...
'String', 'N/A', ...
'Position', [.4, .25, .9, .6]);

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% Text area that displays the longitude
% -------------------------------------
uicontrol(...

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'Parent', hInfoPanel, ...

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'Units', 'normalized', ...
'Style', 'Text', ...

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'Fontweight', 'bold', ...
'HorizontalAlignment', 'left', ...
'Position',[.495, .25, .08, .6], ...

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'String', 'Longitude:');
hInfoLongText = uicontrol(...

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'Parent', hInfoPanel, ...

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'Style', 'text', ...

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'Visible','on',...
'Units', 'normalized',...
'HorizontalAlignment', 'left', ...
'String', 'N/A', ...
'Position', [.585, .25, .09, .6]);

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% Text area that display salinity and temperature
% -----------------------------------------------
uicontrol(...

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'Parent', hInfoPanel, ...

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'Units', 'normalized', ...
'Style', 'Text', ...

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'Fontweight', 'bold', ...
'HorizontalAlignment', 'left', ...
'Position', [.68, .25, .05, .6], ...

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'String', 'SSPS:');
hInfoSSPSText = uicontrol(...

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'Parent', hInfoPanel, ...

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'Style', 'text', ...

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'Visible','on',...
'Units', 'normalized',...
'HorizontalAlignment', 'left', ...
'String', 'N/A', ...
'Position', [.73, .25, .05, .6]);

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uicontrol(...

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'Parent', hInfoPanel, ...

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'Units', 'normalized', ...
'Style', 'Text', ...

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'Fontweight', 'bold', ...
'HorizontalAlignment', 'left', ...
'Position',[.785, .25, .05, .6], ...

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'String', 'SSJT:');
hInfoSSJTText = uicontrol(...

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'Parent', hInfoPanel, ...

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'Style', 'text', ...

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'Visible','on',...
'Units', 'normalized',...
'HorizontalAlignment', 'left', ...
'String', 'N/A', ...
'Position', [.835, .25, .05, .6]);

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uicontrol(...

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'Parent', hInfoPanel, ...

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'Units', 'normalized', ...
'Style', 'Text', ...

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'Fontweight', 'bold', ...
'HorizontalAlignment', 'left', ...
'Position',[.89, .25, .05, .6], ...

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'String', 'SSTP:');
hInfoSSTPText = uicontrol(...

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'Parent', hInfoPanel, ...

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'Style', 'text', ...

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'Visible','on',...
'Units', 'normalized',...
'HorizontalAlignment', 'left', ...
'String', 'N/A', ...
'Position', [.94, .25, .05, .6]);

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%% Plot axes
% -----------------------------------------------------------------------
% The axes 1,2 and 3 will be plot in a uipanel
% axe 1 as propertie 'HandleVisibility' set to 'on' to prevent hidden
% visibility when first plot is empty
%--------------------------------------------------------------------

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hPlotsPanel = uipanel( ...

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'Parent', hMainFig, ...
'Units', 'normalized', ...
'BorderType', 'etchedin',...

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'Visible', 'on', ...
'Position',[0.15, 0.0, .85, .95]);

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hPlotAxes(1) = axes(... % the axes for plotting Salinity
'Parent', hPlotsPanel, ...
'Units', 'normalized', ...
'Visible', 'off', ...

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'HandleVisibility','on', ... % set to callback after first plot
'Position',[.05, .64, .93, .35]);

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hPlotAxes(2) = axes(... % the axes for plotting temperature
'Parent', hPlotsPanel, ...
'Units', 'normalized', ...

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'Visible', 'off', ...
'Tag', 'TAG_AXES_2', ...
'HandleVisibility','on', ...
'Position',[.05, .33, .93, .27]);

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hPlotAxes(3) = axes(... % the axes for plotting ship velocity

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'Parent', hPlotsPanel, ...

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'Units', 'normalized', ...
'Visible', 'off', ...
'Tag', 'TAG_AXES_3', ...
'HandleVisibility','on', ...
'Position',[.05, .02, .93, .27]);

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% The map will be plot in a uipanel
hMapPanel = uipanel( ...
'Parent', hMainFig, ...
'Units', 'normalized', ...
'Visible', 'off', ...
'Position',[0.15, 0, .85, .58]);

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hPlotAxes(4) = axes(... % the axes for plotting ship track map
'Parent', hMapPanel, ...
'Units', 'normalized', ...
'Visible', 'off', ...

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'Color', 'none', ...
'UserData', 'off', ...

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'HandleVisibility','on', ...

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'Position',[.05, .05, .9, .9]);
%% Quality Control Button Group panel
% -----------------------------------------------------------------------
hbgQc = uibuttongroup(...
'Parent', hMainFig, ...
'Title', 'Validation Codes', ...
'FontSize', tsg.fontSize-1, 'Fontweight', 'bold', ...
'tag', 'TAG_QC_DISPLAY_PANEL',...
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'HandleVisibility','on',...
'BorderType', 'etchedin',...
'Position', [.0, .71, .15, .25]);
% Initialize CallBack for button group properties
% -----------------------------------------------
set(hbgQc,'SelectionChangeFcn',@RadiobuttonQc);
%% Context Menu and RadioButtons for Quality control
% -----------------------------------------------------------------------

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hQcCmenu = uicontextmenu(...
'Parent', hMainFig, ...

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'HandleVisibility','on' );
% get list of keys from hashtable tsg.qc.hash, defined inside
% tsg_initialisation.m
% -----------------------------------------------------------
qc_list = get(tsg.qc.hash);
% internal loop count with state to on
% ------------------------------------
count = 0;

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% iterate (loop) on each key store inside hastable
% ------------------------------------------------
for i=1:numel(qc_list)
% get key and some values in hashtable
% ------------------------------------
key = qc_list{i};
label = get(tsg.qc.hash, key, 'label');
color = get(tsg.qc.hash, key, 'color');
state = get(tsg.qc.hash, key, 'state');
% construct context menu with only code set to 'on' (valid)
% ---------------------------------------------------------
if strcmp( state, 'on')
% add menu to hQcCmenu uicontextmenu
% ----------------------------------

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uimenu(...
'Parent', hQcCmenu,...
'HandleVisibility','on', ...
'Label', label,...
'ForegroundColor', color,...
'Callback', {@Qc, key});

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% add button QC to hbgQc uibuttongroup
% ------------------------------------

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uicontrol(...
'Parent', hbgQc,...
'Style', 'radiobutton',...

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'Units', 'normalized', ...
'Fontsize', tsg.fontSize-1, ...

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'HorizontalAlignment', 'left', ...
'HandleVisibility','on', ...
'String', label,...
'Tag', ['TAG_QC_RADIO_' key], ...

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'ForegroundColor', color,...
'Position', [.01, .85-count*.12, .6, 0.09]);

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% add text QC display statistic on hQcPanel
% -----------------------------------------

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uicontrol(...
'Parent', hbgQc,...

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'Style', 'text',...
'Units', 'normalized', ...
'Fontsize', tsg.fontSize-1, ...

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'HorizontalAlignment', 'right', ...
'HandleVisibility','on', ...

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'ForegroundColor', color,...
'Tag', ['TAG_QC_TEXT_' key],...
'Position', [.61, .85-count*.12, .37, 0.09]);
% increment count
% ---------------
count = count + 1;

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end
end
%% uiButtonGroup set to choose the Correction method
% -------------------------------------------------------------------------
% Create the button group
hbgCorMethod = uibuttongroup( ...
'Parent',hMainFig, ...
'Title','Correction Method', ...
'Units', 'normalized', ...
'FontSize',tsg.fontSize-1, 'Fontweight', 'bold',...
'Visible', 'off', ...
'Position',[.0, .25, .15, .18]);
% Create 2 radio buttons in the button group
hrbCorCancel = uicontrol( ...
'Style','pushbutton', ...
'Parent',hbgCorMethod, ...
'Units', 'normalized', ...
'String','Cancel the adjustment',...
'FontSize',tsg.fontSize-1,...
'Tag', 'CORRECT_CANCEL_PUSH', ...
'HandleVisibility','callback', ...
'Callback', @CorCancelCallback);
hrbCorLinear = uicontrol( ...
'Style','pushbutton', ...
'Parent',hbgCorMethod, ...
'Units', 'normalized', ...
'String','Linear adjustment',...
'FontSize',tsg.fontSize-1,...
'Tag', 'CORRECT_LINEAR_PUSH', ...
'pos',[.05 .38 .9 .25], ...
'HandleVisibility','callback', ...
'Callback', @CorLinearCallback);
hrbCorMedian = uicontrol( ...
'Style','pushbutton', ...
'Parent',hbgCorMethod, ...
'Units', 'normalized', ...
'String','Running median filter',...
'FontSize',tsg.fontSize-1,...
'Tag', 'CORRECT_MEDIAN_PUSH', ...
'HandleVisibility','callback', ...
'Callback', @CorMedianCallback);
%% uiPanel for the Date limits used in the Correction module
% Choose the date limits for the correction
% --------------------------------------------------
% Create the uipanel
hpDateLimit = uipanel( ...
'Parent', hMainFig, ...
'Title', 'Date Limits', ...
'Units', 'normalized', ...
'FontSize', tsg.fontSize-1, 'Fontweight', 'bold', ...
'Visible', 'off', ...
'Position', [.0, .46, .15, .18]);
htDateMin = uicontrol( ...
'Parent', hpDateLimit, ...
'Style', 'Text', ...
'String', 'Min : yyyy-mm-dd hh:mm:ss', ...
'HorizontalAlignment', 'left', ...
'Units', 'normalized', ...
'FontSize', tsg.fontSize-1, ...
'Position',[.01 .8 .95 .15]);
hetDateMin = uicontrol( ...
'Parent', hpDateLimit, ...
'Style', 'edit', ...
'Units', 'normalized', ...
'BackgroundColor', 'white',...
'FontSize', tsg.fontSize, ...
'Tag', 'CORRECT_DATEMIN_EDIT',...
'Position',[.01 .6 .95 .17]);
htDateMax = uicontrol( ...
'Parent', hpDateLimit, ...
'Style', 'Text', ...
'String', 'Max : yyyy-mm-dd hh:mm:ss', ...
'HorizontalAlignment', 'left', ...
'Units', 'normalized', ...
'FontSize', tsg.fontSize-1, ...
'Position',[.01 .35 .95 .15]);
hetDateMax = uicontrol( ...
'Parent', hpDateLimit, ...
'Style', 'edit', ...
'Units', 'normalized', ...
'BackgroundColor', 'white',...
'FontSize', tsg.fontSize, ...
'Tag', 'CORRECT_DATEMAX_EDIT',...
'Position',[.01 .15 .95 .17]);
%% uiPanel for the Calibration coefficient used the Correction module
% Create the uipanel
hpCalCoef = uipanel( ...
'Parent', hMainFig, ...
'Title', 'Calibration', ...
'Units', 'normalized', ...
'FontSize', tsg.fontSize-1, 'Fontweight', 'bold', ...
'Visible', 'off', ...
'Position', [.0, .68, .15, .28]);
htCalCNDC1 = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'Text', 'String', 'Conductivity : C = A*C +B', ...
'Units', 'normalized', ...
'HorizontalAlignment', 'left', 'FontSize', tsg.fontSize-1, ...
'Position',[.01 .85 .95 .1]);
htCalCNDC2 = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'Text', 'String', 'A', ...
'Units', 'normalized', ...
'HorizontalAlignment', 'left', 'FontSize', tsg.fontSize-1, ...
'Position',[.01 .75 .08 .1]);
hetCalCNDCSlope = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'edit', ...
'Units', 'normalized', ...
'BackgroundColor', 'white',...
'FontSize', tsg.fontSize, ...
'Tag', 'CORRECT_CAL_CNDC_A',...
'HandleVisibility','on', ...
'Position',[.1 .75 .85 .10]);
htCalCNDC3 = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'Text', 'String', 'B', ...
'Units', 'normalized', ...
'HorizontalAlignment', 'left', 'FontSize', tsg.fontSize-1, ...
'Position',[.01 .6 .08 .1]);
hetCalCNDCOffset = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'edit', ...
'Units', 'normalized', ...
'BackgroundColor', 'white',...
'FontSize', tsg.fontSize, ...
'HandleVisibility','on', ...
'Tag', 'CORRECT_CAL_CNDC_B',...
'Position',[.1 .6 .85 .10]);
htCalSSJT1 = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'Text', 'String', 'SSJT : T = A*T +B', ...
'Units', 'normalized', ...
'HorizontalAlignment', 'left', 'FontSize', tsg.fontSize-1, ...
'Position',[.01 .45 .95 .1]);
htCalSSJT2 = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'Text', 'String', 'A', ...
'Units', 'normalized', ...
'HorizontalAlignment', 'left', 'FontSize', tsg.fontSize-1, ...
'Position',[.01 .35 .08 .1]);
hetCalSSJTSlope = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'edit', ...
'Units', 'normalized', ...
'BackgroundColor', 'white',...
'FontSize', tsg.fontSize, ...
'HandleVisibility','on', ...
'Tag', 'CORRECT_CAL_SSJT_A',...
'Position',[.1 .35 .85 .10]);
htCalSSJT3 = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'Text', 'String', 'B', ...
'Units', 'normalized', ...
'HorizontalAlignment', 'left', 'FontSize', tsg.fontSize-1, ...
'Position',[.01 .2 .08 .1]);
hetCalSSJTOffset = uicontrol( ...
'Parent', hpCalCoef, ...
'Style', 'edit', ...
'Units', 'normalized', ...
'FontSize', tsg.fontSize, 'BackgroundColor', 'white',...
'HandleVisibility','on', ...
'Tag', 'CORRECT_CAL_SSJT_B',...
'Position',[.1 .2 .85 .10]);
hrbCal = uicontrol( ...
'Style','pushbutton', ...
'Parent',hpCalCoef, ...
'Units', 'normalized', ...
'String','Calibrate',...
'FontSize',tsg.fontSize-1,...
'Tag', 'CORRECT_CAL_PUSH', ...
'pos',[.05 .04 .9 .13], ...
'HandleVisibility','callback', ...
'Callback', @CalibrateCallback);
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%% test if user preference autoload field is checked (on)
% -------------------------------------------------------
if strcmp(root.preference.autoload, 'on')
% this code need to be fatorized file/open menu
% ---------------------------------------------
% A TSG file has been open and read
% ---------------------------------
set( hOpenMenu, 'UserData', 'on' );
% Show handles marked as hidden with HandleVisibility property set to
% callback or off
% -------------------------------------------------------------------
set(0, 'ShowHiddenHandles', 'on');
% enable toolbar menu pushtool
% ----------------------------
hdl_pushtool = findobj('-regexp','Tag', 'PUSHTOOL_');
set(hdl_pushtool, 'Enable', 'on');
% enable Save menu
% ----------------
set(hSaveMenu, 'Enable', 'on');
% update the filename display
% ---------------------------
set( hInfoFileText, 'String', tsg.file.name);
% update some fields in tsg structure
% -----------------------------------
updateTsgStruct(hMainFig);
% Running average of TSG time series
% ----------------------------------
tsg_moveaverage(hMainFig);
% Get application data for the test
% ---------------------------------
tsg = getappdata( hMainFig, 'tsg_data');
if ~isempty( tsg.SSPS_WS ) || ~isempty( tsg.SSPS_EXT )
tsg_mergesample( hMainFig );
end
% Draw the 3 plots of the validation figure
% -----------------------------------------
plot_Validation( hMainFig, hPlotAxes, 1 );
plot_Validation( hMainFig, hPlotAxes, 2 );
plot_Validation( hMainFig, hPlotAxes, 3 );
% Draw the map with the ship track
% --------------------------------
% The callback to detect the mouse motion can be set to on
% --------------------------------------------------------
set( hMainFig, 'UserData', 'ButtonMotionOn');
% Hide handles marked as hidden with HandleVisibility property set to
% callback or off
% -------------------------------------------------------------------
set(0, 'ShowHiddenHandles', 'off');
end
%% *************************** CALLBACKS **********************************
%% OpenMenuCallback

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%----------------------------------------------------------------------
% Callback function run when the Open menu item is selected
%----------------------------------------------------------------------

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function OpenMenuCallback(hObject, eventdata)
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% Desactivate some toggle buttons
% -------------------------------
set( hQCToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
set( hTimelimitToggletool, 'state', 'off' );
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% Pointer set to watch during reading and plotting
% ------------------------------------------------
set( hMainFig, 'Pointer', 'watch' );
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% Open standard dialog box for retrieving files
% ---------------------------------------------

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[fileName, pathname, filterIndex] = uigetfile( ...
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{'*.txt';'*.xml';'*.nc';'*.lbv';'*.btl'; '*.arg'}, 'Pick a file');

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error1 = -1;
error2 = -1;

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% flushes the event queue and updates the closed uigetfile window
% ---------------------------------------------------------------
drawnow;
% if the user clicks the Cancel button or closes the dialog window,
% FileName and PathName are set to 0.
% -----------------------------------------------------------------

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if ~isequal(fileName, 0)
% construct valid and full file path
% -----------------------------------
fullFileName = [pathname filesep fileName];

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% Read the data
% -------------
switch filterIndex
case 1
error1 = readTsgDataTxt( hMainFig, fullFileName );

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case 2
error1 = readTsgDataXML( hMainFig, fullFileName );

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case 3
error1 = readTsgDataNetCDF( hMainFig, fullFileName );

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%# a modifier
if error1 == 1
error2 = error1;
end

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case 4
error1 = readTsgDataLabview( hMainFig, fullFileName );
if error1 ~= -1
automaticQC( hMainFig );
end
if ~isempty( tsg.SSPS )
error2 = readBucketData( hMainFig, fullFileName );
else
msgbox( 'Load a TSG file before a Water sample file', 'Read Bucket');
end
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case 6
if ~isempty( tsg.SSPS )
error2 = readCoriolisData( hMainFig, fullFileName );
else
msgbox( 'Load a TSG file before a Water sample file', 'Read Bucket');
end

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otherwise
return;

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end
% A TSG file has been read. Plot the data.
% ----------------------------------------
if error1 ~= -1
% A TSG file has been open and read
% ---------------------------------
set( hOpenMenu, 'UserData', 'on' );

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% enable toolbar menu pushtool
% ----------------------------

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hdl_pushtool = findobj('-regexp','Tag', 'PUSHTOOL_');
set(hdl_pushtool, 'Enable', 'on');
% enable Save menu
% ----------------
set(hSaveMenu, 'Enable', 'on');

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% update the filename display
% ---------------------------

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set( hInfoFileText, 'String', fileName);

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% update some fields in tsg structure
% -----------------------------------
updateTsgStruct(hMainFig);
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% Running average of TSG time series
% ----------------------------------
tsg_moveaverage(hMainFig);

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% The callback to detect the mouse motion can be set to on
% --------------------------------------------------------
set( hMainFig, 'UserData', 'ButtonMotionOn');
% Update QC statistics
% --------------------
display_QC( hMainFig, hPlotAxes)

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end
% Get application data
% --------------------
tsg = getappdata( hMainFig, 'tsg_data');
% Merge bucket and external samples
% ---------------------------------
if ~isempty( tsg.SSPS_WS ) || ~isempty( tsg.SSPS_EXT )
tsg_mergesample( hMainFig );
tsg = getappdata( hMainFig, 'tsg_data');
% Draw the 3 plots of the validation figure
% -----------------------------------------
plot_Validation( hMainFig, hPlotAxes, 1 );
plot_Validation( hMainFig, hPlotAxes, 2 );
plot_Validation( hMainFig, hPlotAxes, 3 );

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% Pointer reset to arrow
% ----------------------
set( hMainFig, 'Pointer', 'arrow' );
end
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%% Cal_OnMenuCallback ..................................... Calibration
%----------------------------------------------------------------------
% Callback function run when
%----------------------------------------------------------------------
function Cal_OnMenuCallback( hObject, eventdata)
set( hpCalCoef, 'Visible', 'on' );
set( hbgQc, 'Visible', 'off');
% Pushbutton
set( hQCToggletool, 'enable', 'off' );
set( hClimToggletool, 'enable', 'off' );
set( hBottleToggletool, 'enable', 'off' );
set( hHeaderPushtool, 'enable', 'off' );
% Activate Time selection uipanels
% --------------------------------
set( hpDateLimit, 'Visible', 'on' );
set( hTimelimitToggletool, 'enable', 'on' );
% Draw the 3 plots of the validation figure
% -----------------------------------------
plot_Calibration( hMainFig, hPlotAxes, 1 );
plot_Calibration( hMainFig, hPlotAxes, 2 );
plot_Calibration( hMainFig, hPlotAxes, 3 );
% Get tsg application data
% ------------------------
tsg = getappdata( hMainFig, 'tsg_data' );
% Write the Cal Coef in the Editable uicontrol
% --------------------------------------------
if isempty( tsg.CNDC_LINCOEF )
set( hetCalCNDCSlope, 'String', '1');
set( hetCalCNDCOffset, 'String', '0');
else
set( hetCalCNDCSlope, 'String', num2str(tsg.CNDC_LINCOEF(1)));
set( hetCalCNDCOffset, 'String', num2str(tsg.CNDC_LINCOEF(2)));
end
if isempty( tsg.SSJT_LINCOEF )
set( hetCalSSJTSlope, 'String', '1');
set( hetCalSSJTOffset, 'String', '0');
else
set( hetCalSSJTSlope, 'String', num2str(tsg.SSJT_LINCOEF(1)));
set( hetCalSSJTOffset, 'String', num2str(tsg.SSJT_LINCOEF(2)));
end
end
%% Cal_OffMenuCallback ..................................... Calibration
%----------------------------------------------------------------------
% Callback function run when
%----------------------------------------------------------------------
function Cal_OffMenuCallback( hObject, eventdata)
set( hpCalCoef, 'Visible', 'off' );
set( hbgQc, 'Visible', 'on');
% Enable Pushbuttons
% ------------------
set( hQCToggletool, 'enable', 'on' );
set( hClimToggletool, 'enable', 'on' );
set( hBottleToggletool, 'enable', 'on' );
set( hHeaderPushtool, 'enable', 'on' );
% Desactivate Time selection uipanels
% --------------------------------
set( hpDateLimit, 'Visible', 'off' );
set( hTimelimitToggletool, 'enable', 'off' );
% Get tsg application data
% ------------------------
tsg = getappdata( hMainFig, 'tsg_data' );
% Save the calibration coefficient
% --------------------------------
tsg.CNDC_LINCOEF(1) = str2num(get( hetCalCNDCSlope, 'String'));
tsg.CNDC_LINCOEF(2) = str2num(get( hetCalCNDCOffset, 'String'));
tsg.SSJT_LINCOEF(1) = str2num(get( hetCalSSJTSlope, 'String'));
tsg.SSJT_LINCOEF(2) = str2num(get( hetCalSSJTOffset, 'String'));
% Save tsg application data
% --------------------------
setappdata( hMainFig, 'tsg_data', tsg );
% Draw the 3 plots of the validation figure
% -----------------------------------------
plot_Validation( hMainFig, hPlotAxes, 1 );
plot_Validation( hMainFig, hPlotAxes, 2 );
plot_Validation( hMainFig, hPlotAxes, 3 );
end
%% Zoom_OffMenuCallback
%----------------------------------------------------------------------

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% Callback function run when the zoom toggle toolbar is released

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%----------------------------------------------------------------------

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function Zoom_OffMenuCallback(hObject, eventdata)
% turns interactive zooming off
% -----------------------------
zoom off;
% Set the right limit and interval to the 3 axes
% ----------------------------------------------
for iaxe = 1:3
set(hPlotAxes(iaxe),'XTickMode','auto')
datetick(hPlotAxes(iaxe),'x','keeplimits')
end

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% Turns off the automatic adaptation of date ticks
% ------------------------------------------------
zoomAdaptiveDateTicks('off');

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end

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%% Zoom_OnMenuCallback

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%----------------------------------------------------------------------
% Callback function run when the zoom toggle toolbar is released
%----------------------------------------------------------------------
function Zoom_OnMenuCallback(hObject, eventdata)
% cursor back to normal
% ---------------------
set(hMainFig,'Pointer','arrow');

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% returns a zoom mode object for the figure hMainFig handle
% --------------------------------------------------------

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hZoom = zoom(hMainFig);

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% Disallows a zoom operation on the MAP axes objects
% --------------------------------------------------
setAllowAxesZoom(hZoom, hPlotAxes(4), false);

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% turns on interactive zooming (same effect than zoom on) but prevent
% side effect on another figure
% -------------------------------------------------------------------
set(hZoom,'enable', 'on');

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%zoom on;

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% Turns on the automatic adaptation of date ticks
% -----------------------------------------------
zoomAdaptiveDateTicks('on');
% Desactivate some toggle buttons
% -------------------------------
set( hQCToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
set( hTimelimitToggletool, 'state', 'off' );

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end
%% Pan_OffMenuCallback

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%----------------------------------------------------------------------

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% Callback function run when the pan toggle toolbar is released

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%----------------------------------------------------------------------

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function Pan_OffMenuCallback(hObject, eventdata)
% turns interactive pan off
% -------------------------
pan off;
% Set the right limit and interval to the 3 axes
% ----------------------------------------------
for iaxe = 1:3
set(hPlotAxes(iaxe),'XTickMode','auto')
datetick(hPlotAxes(iaxe),'x','keeplimits')
end

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% Turns off the automatic adaptation of date ticks
% ------------------------------------------------
panAdaptiveDateTicks('off');

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end

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%% Pan_OnMenuCallback

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%----------------------------------------------------------------------
% Callback function run when the pan toggle toolbar is selected
%----------------------------------------------------------------------
function Pan_OnMenuCallback(hObject, eventdata)
% cursor back to normal
% ---------------------
set(hMainFig,'Pointer','arrow');

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% Returns a pan mode object for the figure handle

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% -----------------------------------------------

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hPan = pan(hMainFig);

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% Disallows a pan operation on the MAP axes objects
% --------------------------------------------------
setAllowAxesPan(hPan, hPlotAxes(4), false);

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% turns on interactive pan (same effect than pan on) but prevent
% side effect on another figure
% --------------------------------------------------------------

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set(hPan,'enable', 'on');
% Turns on the automatic adaptation of date ticks
% -----------------------------------------------
panAdaptiveDateTicks('on');
% Desactivate some toggle buttons
% -------------------------------
set( hQCToggletool, 'state', 'off' );
set( hZoomToggletool, 'state', 'off' );
set( hTimelimitToggletool, 'state', 'off' );

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end

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%% QC_OnMenuCallback ............................... Quality Control Module

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%----------------------------------------------------------------------

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% Callback function run when the QC toggle tool is pressed

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%----------------------------------------------------------------------
function QC_OnMenuCallback(gcbo, eventdata)

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% Desactivate Zoom and Pan functions.
% ----------------------------------
set( hZoomToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
set( hTimelimitToggletool, 'state', 'off' );
set( hCalToggletool, 'state', 'off' );

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% Activate right clic context menu on first axes (salinity)
% ---------------------------------------------------------

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% Activate clic mouse menu on first axes (salinity) for next rbbox
% ----------------------------------------------------------------
set(hPlotAxes(1),'ButtonDownFcn', @QC_SelectCallback);

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% change cursor to crosshair aspect
% ---------------------------------

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set( hMainFig, 'Pointer', 'crosshair');

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% -------------------------------------------------------------

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% nested function on mouse clic when QC toggle tool is selected

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% -------------------------------------------------------------
function QC_SelectCallback(gcbo, eventdata)
% disable ButtonMotion on main fig during select

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% prevent drawing to map
% ----------------------------------------------
set( hMainFig, 'WindowButtonMotionFcn', []);

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% Retrieve named application data
% -------------------------------
tsg = getappdata( hMainFig, 'tsg_data');

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% Selection of the data within the figure
% ---------------------------------------
point1 = get(gca,'CurrentPoint'); % button down detected
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finalRect = rbbox; % return figure units
point2 = get(gca,'CurrentPoint'); % button up detected

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point1 = point1(1,1:2); % extract x and y

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point2 = point2(1,1:2);

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p1 = min(point1,point2);
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p2 = max(point1,point2); % calculate locations
% The following code is only executed if the left mouse button is clicked.
% If the right mouse button is clicked, this code must not be
% executed as the variable 'ind' will be emptied. And this variable
% is used when the context menu (callback 'Qc') is called
% -----------------------------------------------------------------
if ~strcmp( get(gcf, 'SelectionType'), 'alt')
% The QC is applied either on TSG data either on Sample data.
% it depends if the Botte Toggle button has been cliked on
% -----------------------------------------------------------
if strcmp( get(hBottleToggletool, 'state'), 'on')
% get index on selected zone
% --------------------------
ind = find(tsg.DAYD_SPL > p1(1,1) & tsg.DAYD_SPL < p2(1,1) & ...
tsg.SSPS_SPL_DIF > p1(1,2) & tsg.SSPS_SPL_DIF < p2(1,2));
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% Keep the information on the indices of the selected zone
% --------------------------------------------------------
tsg.rbboxind = ind .* ones(size(ind));
% Modifiy the QC
% --------------
tsg.SSPS_SPL_QC(ind) = tsg.qc.active.Code;
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% Save the modifications
% ----------------------
setappdata( hMainFig, 'tsg_data', tsg);
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% Update sample QC in the _WS and _EXT records
% --------------------------------------------
updateSampleQC( hMainFig );
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% plot selected data with selected code
% --------------------------------------
plot_Correction( hMainFig, hPlotAxes);
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else
% get index on selected zone
% ---------------------------
ind = find(tsg.DAYD > p1(1,1) & tsg.DAYD < p2(1,1) & ...
tsg.SSPS > p1(1,2) & tsg.SSPS < p2(1,2));
% Keep the information on the indices of the selected zone
% --------------------------------------------------------
tsg.rbboxind = ind .* ones(size(ind));
% Modifiy the QC
% --------------
tsg.SSPS_QC(ind) = tsg.qc.active.Code;
% put last SSPS_QC in queue (Undo/Redo)
% -------------------------------------
tsg.queue = push( tsg.queue, tsg.SSPS_QC);
% store QC in queue object, for undo
% ----------------------------------
tsg.queue = push(tsg.queue, tsg.SSPS_QC);
% Save the modifications
% ----------------------
setappdata( hMainFig, 'tsg_data', tsg);
% Draw plot 1 of the validation figure
% ------------------------------------
plot_Validation( hMainFig, hPlotAxes, 1 );
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% refresh QC statistic panel
% --------------------------
display_QC( hMainFig, hPlotAxes );
% enable undo menu
% ----------------
set(findobj('tag','UIMENU_UNDO'),'enable','on');
end
% As soon as a modification took place the data should be saved
% -------------------------------------------------------------
set( hSaveMenu, 'UserData', 'on' );

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end

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% enable ButtonMotion on main fig after select QC area
% ----------------------------------------------------
set( hMainFig, 'WindowButtonMotionFcn', @MouseMotion);

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end
end
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%% QC_OffMenuCallback .............................. Quality Control Module
%----------------------------------------------------------------------
% Callback function run when the QC toggle tool is released
%----------------------------------------------------------------------
function QC_OffMenuCallback(gcbo, eventdata)
% Desactive right clic menu on first axes (salinity)
% ---------------------------------------------------
set(hPlotAxes(1),'UIContextMenu', []);
% Desactive clic mouse menu (zoom) on first axes (salinity)
% ----------------------------------------------------------
set(hPlotAxes(1),'ButtonDownFcn', []);
% Uipanel no more visible
% -----------------------
%set( hbgQc, 'Visible', 'off' );
% cursor back to normal
% ---------------------
set(hMainFig,'Pointer','arrow');
end
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%% Qc context menu selected ........................ Quality Control Module
%-----------------------------------------------------------
% Callback function run when the QC context menu is selected
%
% Context menu used to attribute a QC to the TSG time series
%
%-----------------------------------------------------------
function Qc(hObject, eventdata, key)
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% Retrieve Default Quality Code and Color
% ---------------------------------------
tsg = getappdata( hMainFig, 'tsg_data');
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% get key and some values in hashtable
% ------------------------------------
code = get(tsg.qc.hash, key, 'code');
color = get(tsg.qc.hash, key, 'color');
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% set active code and color from selected context menu
% ----------------------------------------------------
tsg.qc.active.Code = code;
tsg.qc.active.Color = color;
% Modify and plot the last selected tsg data
% ------------------------------------------
if ~isempty( tsg.rbboxind )
if strcmp( get(hBottleToggletool, 'state'), 'on')
tsg.SSPS_SPL_QC(tsg.rbboxind) = tsg.qc.active.Code;
% Save tsg.SSPS_QC and tsg.qc.active.Code
% in the application data
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% ----------------------------------------
% Draw the 3 plots of the Correction figure
% -----------------------------------------
plot_Correction( hMainFig, hPlotAxes );
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else
tsg.SSPS_QC(tsg.rbboxind) = tsg.qc.active.Code;
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% Save tsg.SSPS_QC in the application data
% ----------------------------------------
setappdata( hMainFig, 'tsg_data', tsg );
% Draw plot 1 of the validation figure
% ------------------------------------
plot_Validation( hMainFig, hPlotAxes, 1 );
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end
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% Update the radio button corresponding to the selected
% QC context menu (rbg : RadioButtonGroup)
% -----------------------------------------------------
radioTag = ['TAG_QC_RADIO_' key]; % Build the TAG of the CODE
hbgChildren = get(hbgQc,'Children'); % Get the handles of the rbg
hbgTagCell = get(hbgChildren, 'tag'); % get the TAG of the rbg
ind = strcmp(radioTag, hbgTagCell); % Compare the TAG
hRadioButton = hbgChildren( ind == 1 ); % Get the handle of the button
set(hbgQc, 'SelectedObject', hRadioButton); % Make this button active
setappdata( hMainFig, 'tsg_data', tsg );

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end

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%% Radiobutton Quality Control ..................... Quality Control Module
% ---------------------------------------------------------------
% Callback to select CODE and COLOR QC from the RadioButton Group
% ---------------------------------------------------------------
function RadiobuttonQc(source, eventdata)
% Retrieve Default Quality Code and Color
% ---------------------------------------
tsg = getappdata( hMainFig, 'tsg_data');
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% Retrieve the key from the active RadioButton
% --------------------------------------------
rbTag = get(eventdata.NewValue,'Tag');
key = strrep(rbTag, 'TAG_QC_RADIO_', '');
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% store his handle to uibuttongroup userdata
% ------------------------------------------
set(hbgQc,'Userdata', eventdata.NewValue);
% get key and some values in hashtable
% ------------------------------------
code = get(tsg.qc.hash, key, 'code');
color = get(tsg.qc.hash, key, 'color');
% set active code and color from selected context menu
% ----------------------------------------------------
tsg.qc.active.Code = code;
tsg.qc.active.Color = color;
setappdata( hMainFig, 'tsg_data', tsg );
end
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%% preQcPanCallback .................................Quality Control Module
function preQcPanCallback(obj, evd)
set(hQCToggletool, 'state', 'off' );
end
%% postQcPanCallback ............................... Quality Control Module
function postQcPanCallback(obj, evd)
set(hQCToggletool, 'state', 'on' );
% Set the right limit and interval to the 3 axes
% ----------------------------------------------
for iaxe = 1:3
set(hPlotAxes(iaxe),'XTickMode','auto')
datetick(hPlotAxes(iaxe),'x','keeplimits')
end
end
%% MouseMotion

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%---------------------------------------------------------------------

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% Callback function run when mouse pointer is moving on temperature plot
% draw corresponding measurement position on map

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%---------------------------------------------------------------------

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function MouseMotion(hObject, eventdata)
% Test if the callback can be activated
% -------------------------------------
if strcmp( get( hMainFig, 'UserData'), 'ButtonMotionOn')
% Retrieve named application data
% -------------------------------
tsg = getappdata( hMainFig, 'tsg_data');
% Get current position of cusor and return its coordinates in
% axes with handle h_axes
% -----------------------------------------------------------
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a = get(hPlotAxes(1), 'CurrentPoint');
x = a(2,1);
y = a(2,2);
% Get the Limits of axes 1
% ------------------------
limx = get(hPlotAxes(1), 'XLim');
limy = get(hPlotAxes(1), 'YLim');
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% Code to Activate the PAN function when QC mode is active
% A PAN zone is defined in the bottom (10%) of PlotAxes(1)
% 2 callback are needed :
% 1 - one to desactivate QC when Pan is set to on.
% 2 - one to reactivate QC once the pan has been used.
% ---------------------------------------------------------
qcState = get(hQCToggletool, 'state' );
if strcmp(qcState, 'on' );
% Suppose that Y axes is increasing from the bottom to the top
% ------------------------------------------------------------
limy2 = limy(1) + (limy(2)-limy(1)) * 0.10;
if x > limx(1) && x < limx(2) && y <= limy2 && y >= limy(1)
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set(hPan,'ActionPreCallback', @preQcPanCallback);
set(hPan,'ActionPostCallback', @postQcPanCallback);
set(hPan,'Enable','on');
else
pan off
end
end
% Dynamically display data in uicontrol
% -------------------------------------
if x > tsg.DAYD(1) && x < tsg.DAYD(end)
%if x > limx(1) && x < limx(2)
indCursor = find( tsg.DAYD > x);
set( hInfoDateText, 'String',...
datestr(tsg.DAYD(indCursor(1)),'dd/mm/yyyy HH:MM'));
set( hInfoLatText, 'String', dd2dm(tsg.LATX(indCursor(1)),0));
set( hInfoLongText, 'String', dd2dm(tsg.LONX(indCursor(1)),1));
set( hInfoSSPSText, 'String', tsg.SSPS(indCursor(1)));
set( hInfoSSJTText, 'String', tsg.SSJT(indCursor(1)));
if ~isempty(tsg.SSTP)
set( hInfoSSTPText, 'String', tsg.SSTP(indCursor(1)));
end
% Plot the position on the map if this one is active
% --------------------------------------------------
if strcmp( get(hMapPanel, 'Visible'), 'on')
% Select the map axes
% -------------------
axes( hPlotAxes(4));
if isempty( get(hMapPanel, 'UserData'))
hMarker = m_line( tsg.LONX(indCursor(1)), tsg.LATX(indCursor(1)),...
'Marker','o','MarkerSize',5, ...
'Color','r', 'MarkerFaceColor','r');
set(hMapPanel, 'UserData', hMarker)
else
delete(get(hMapPanel, 'UserData'));
hMarker = m_line( ...
tsg.LONX(indCursor(1)), tsg.LATX(indCursor(1)),...
'Marker','o','MarkerSize',5, ...
'Color','r', 'MarkerFaceColor','r');

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end
end
end
end

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end
%% Map_OffMenuCallback

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%---------------------------------------------------------------------
% Callback function run when the Map tool bar item is unselected
%---------------------------------------------------------------------
function Map_OffMenuCallback(hObject, eventdata)
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%if ~isempty( get(hMapPanel, 'UserData'))
% delete(get(hMapPanel, 'UserData'));
%end
%hLines = findobj( hPlotAxes(4), 'Tag', 'TAG_AXES_MAP');
%hLines = get( hPlotAxes(4), 'Children' );
%if ~isempty( hLines )
% delete(hLines);
%end
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% Make the earth map invisible
% ----------------------------
set(hMapPanel, 'Visible', 'off' );

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end

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%% Map_OnMenuCallback

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%---------------------------------------------------------------------
% Callback function run when the Map tool bar item is selected
%---------------------------------------------------------------------
function Map_OnMenuCallback(hObject, eventdata)

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% Desactivate Zoom and Pan toggle buttons
% may be change in the futur ...
% ---------------------------------------
set(hZoomToggletool, 'state', 'off' );
set(hPanToggletool, 'state', 'off' );

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% Make the earth map visible
% --------------------------

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set(hMapPanel, 'Visible', 'on' );
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plot_map( hMainFig, hPlotAxes)

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end
%% Bottle_OnMenuCallback ................................ Correction Module

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%---------------------------------------------------------------------
% Callback function run when the bootle push tool is selected

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%---------------------------------------------------------------------
function Bottle_OnMenuCallback(hObject, eventdata)
% Callback function run when the Bottle tool bar item is selected
% Get the tsg structure
% ---------------------
tsg = getappdata(hMainFig, 'tsg_data');
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% Desactivate the Climatology button
% ----------------------------------
set( hClimToggletool, 'Enable', 'off');
% Switch somme buttons
% --------------------
set( hZoomToggletool, 'state', 'off' );
set( hQCToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
set( hMapToggletool, 'state', 'off' );
set( hCalToggletool, 'enable', 'off' );
set( hTimelimitToggletool, 'enable', 'on' );
% Activate uipanels
% -----------------
set( hpDateLimit, 'Visible', 'on' );
set( hbgCorMethod, 'Visible', 'on' );
% Test if tsg and sample data have been loaded
% --------------------------------------------
% Compute the sample-TSG differences
% ----------------------------------
diffTsgSample( hMainFig );
% Plot in the 3 axes
% ------------------
plot_Correction( hMainFig, hPlotAxes );
% Get the information on time limits of the time series
% Write them in the uipanel
% -----------------------------------------------------
noNaN = tsg.DAYD(~isnan( tsg.DAYD ));
set( hetDateMin, 'String', datestr(noNaN(1), 31));
set( hetDateMax, 'String', datestr(noNaN(end), 31));
% Desactivate the corretion module
% --------------------------------
set( hBottleToggletool, 'state', 'off' );
msgbox('Sample data not loaded in the program', 'modal');

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end
%% Bottle_OffMenuCallback ............................... Correction module
%---------------------------------------------------------------------
% Callback function run when the bootle push tool is selected
%---------------------------------------------------------------------
function Bottle_OffMenuCallback(hObject, eventdata)
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% Activate the Climatology button
% -------------------------------
set( hClimToggletool, 'Enable', 'on');
% If necessary toggle off some buttons
% ------------------------------------
set( hZoomToggletool, 'state', 'off' );
set( hQCToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
set( hMapToggletool, 'state', 'off' );
set( hCalToggletool, 'enable', 'on' );
set( hTimelimitToggletool, 'enable', 'off' );
% Desactivate some toolbar buttons
% --------------------------------
set( hpDateLimit, 'Visible', 'off' );
set( hbgCorMethod, 'Visible', 'off' );
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% Desactivate Click Mouse on figure
% ---------------------------------
set( hMainFig, 'WindowButtonDownFcn', []);
% Drawing only necessary if the Correction moduel has been activated
% ------------------------------------------------------------------
if ~isempty( tsg.SSPS_SPL )
% Draw the 3 plots of the validation figure
% -----------------------------------------
plot_Validation( hMainFig, hPlotAxes, 1 );
plot_Validation( hMainFig, hPlotAxes, 2 );
plot_Validation( hMainFig, hPlotAxes, 3 );
end
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%% SelectTime_OnMenuCallback ............................ Correction module
%----------------------------------------------------------------------
function SelectTime_OnMenuCallback(hObject, eventdata)
% Callback function run when the ....
% Desactivate Zoom and Pan functions.
% ----------------------------------
set( hZoomToggletool, 'state', 'off' );
set( hQCToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
% Create a pointer to select the time limits
% ------------------------------------------
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selTimePointer = ones(16)+1;
selTimePointer(1,:) = 1; selTimePointer(16,:) = 1;
selTimePointer(:,1) = 1; selTimePointer(:,16) = 1;
selTimePointer(1:4,8:9) = 1; selTimePointer(13:16,8:9) = 1;
selTimePointer(8:9,1:4) = 1; selTimePointer(8:9,13:16) = 1;
selTimePointer(5:12,5:12) = NaN; % Create a transparent region in the center
% Activate clic mouse menu on second axes (salinity) for next rbbox
% ----------------------------------------------------------------
set(hMainFig,'WindowButtonDownFcn', @Time_SelectCallback);
% change cursor
% ---------------
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set( hMainFig, 'Pointer', 'custom',...
'PointerShapeCData', selTimePointer, 'PointerShapeHotSpot',[9 9]);
% ----------------------------------------------------------------------
% nested function on mouse clic when Select Time toggle tool is selected
% ----------------------------------------------------------------------
function Time_SelectCallback(gcbo, eventdata)
% disable ButtonMotion on main fig during select
% prevent drawing to map
% ----------------------------------------------
set( hMainFig, 'WindowButtonMotionFcn', []);
% Retrieve named application data
% -------------------------------
tsg = getappdata( hMainFig, 'tsg_data');
% Selection of the data within the figure
point1 = get(gca,'CurrentPoint'); % button down detected
finalRect = rbbox; % return figure units
point2 = get(gca,'CurrentPoint'); % button up detected
point1 = point1(1,1:2); % extract x and y
point2 = point2(1,1:2);
p1 = min(point1,point2);
p2 = max(point1,point2); % calculate locations
% get index on selected zone - Only on X axes (time)
% --------------------------------------------------
ind = find(tsg.DAYD >= p1(1,1) & tsg.DAYD <= p2(1,1));
% Write the date in the Editable uicontrol
% ----------------------------------------
set( hetDateMin, 'String', datestr(tsg.DAYD(ind(1)), 31));
set( hetDateMax, 'String', datestr(tsg.DAYD(ind(end)), 31));
% enable ButtonMotion on main fig after select QC area
% ----------------------------------------------------
set( hMainFig, 'WindowButtonMotionFcn', @MouseMotion);
%% SelectTime_OffMenuCallback ........................... Correction module
%--------------------------------------------------------------------------
function SelectTime_OffMenuCallback(hObject, eventdata)
% Callback function run when the ....
% Desactivate time limit buttons
% ------------------------------
set( hTimelimitToggletool, 'state', 'off');
set( hMainFig,'WindowButtonDownFcn', []);
set(hMainFig,'Pointer','arrow');
%% CorCancelCallback .................................... Correction Module
function CorCancelCallback(hObject, eventdata)
% Desactivate somme Toggle button
% -------------------------------
set( hZoomToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
set( hQCToggletool, 'state', 'off' );
set( hTimelimitToggletool, 'state', 'off' );
tsg = getappdata(hMainFig, 'tsg_data');
tsg.SSPS_ADJUSTED_ERROR = NaN*ones(size(tsg.SSPS));
setappdata(hMainFig, 'tsg_data', tsg);
% Plot in the 3 axes
% ------------------
plot_Correction( hMainFig, hPlotAxes );
%% CorLinearCallback .................................... Correction Module
function CorLinearCallback(hObject, eventdata)
% Callback function run when
% Desactivate somme Toggle button
% -------------------------------
set( hZoomToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
set( hQCToggletool, 'state', 'off' );
set( hTimelimitToggletool, 'state', 'off' );
% Get the time limits for the correction A TESTER
% --------------------------------------
dateMin = datenum(get( hetDateMin, 'String'), 'yyyy-mm-dd HH:MM:SS');
dateMax = datenum(get( hetDateMax, 'String'), 'yyyy-mm-dd HH:MM:SS');
% Compute the sample-TSG differences
% ----------------------------------
diffTsgSample( hMainFig );
% Correction
% ----------
error = corTsgLinear(hMainFig, dateMin, dateMax);
% Plot in the 3 axes
% ------------------
plot_Correction( hMainFig, hPlotAxes );
case -1
msgbox( 'Date limits are not correct',...
'Correction module', 'warn', 'modal');
end
%% CorMedianCallback .................................... Correction Module
function CorMedianCallback(hObject, eventdata)
% Callback function run when
% Desactivate somme Toggle button
% -------------------------------
set( hZoomToggletool, 'state', 'off' );
set( hPanToggletool, 'state', 'off' );
set( hQCToggletool, 'state', 'off' );
set( hTimelimitToggletool, 'state', 'off' );
% Get the time limits for the correction A TESTER
% --------------------------------------
dateMin = datenum(get( hetDateMin, 'String'), 'yyyy-mm-dd HH:MM:SS');
dateMax = datenum(get( hetDateMax, 'String'), 'yyyy-mm-dd HH:MM:SS');
% Compute the sample-TSG differences
% ----------------------------------
diffTsgSample( hMainFig );
% Correction
% ----------
error = corTsgMedian(hMainFig, dateMin, dateMax);
switch error
case 1
% Plot in the 3 axes
% ------------------
plot_Correction( hMainFig, hPlotAxes );
case -1
msgbox( 'Date limits are not correct',...
'Correction module', 'warn', 'modal');
end
end
%% Clim_OffMenuCallback
%------------------------------------------------------------------------

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% Callback function run when the Levitus climatology toolbar is unselected
%------------------------------------------------------------------------
function Clim_OffMenuCallback(hObject, eventdata)

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% Get lines handles from tag
% --------------------------
hLines = findobj('-regexp', 'Tag', 'TAG_LINE_CLIMATO_');

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% Delete climatology lines on axes
% ---------------------------------
delete(hLines);

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end

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%% Clim_OnMenuCallback

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%------------------------------------------------------------------------
% Callback function run when the Levitus climatology toolbar is unselected
%------------------------------------------------------------------------
function Clim_OnMenuCallback(hObject, eventdata)

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% Test if the TSG and bucket files have been read
% -----------------------------------------------
if strcmp( get(hOpenMenu, 'UserData'), 'on' )

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% plot climatology

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% ----------------

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plot_Climatology(hMainFig, hPlotAxes);

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end
end
%% ClimatoSelectMenuCallback
% -------------------------------------------------------------------
% Callback function run when climato submenu is selected
% -------------------------------------------------------------------
function ClimatoSelectMenuCallback(hObject, eventdata, climato, time)
% find all climato submenu and set 'checked' property to 'off'
% ------------------------------------------------------------
hdl = findobj( '-regexp', 'tag', 'TAG_UIMENU_CLIMATO');
set(hdl, 'checked', 'off');
% set current climato submenu checked
% -----------------------------------
set(hObject, 'checked', 'on');
% memorize action on climatology menu for next use
% ------------------------------------------------
s.type = climato;
s.time = time;
set(hClimatoMenu, 'userdata', s);
% check if climatology toggle button is set
% -----------------------------------------
if strcmp(get(hClimToggletool, 'state'), 'on')

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% clear last plotted climatology
% ------------------------------
Clim_OffMenuCallback;

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% plot and read (eventually) new climatology
% ------------------------------------------
plot_Climatology(hMainFig, hPlotAxes);

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end
end
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%% PreferencesMenuCallback
% -------------------------------------------------------------------
% Callback function run when Option/Preference is selected
% -------------------------------------------------------------------
function PreferencesMenuCallback(hObject, eventdata)
% Test if the preference menu is allready checked
% -----------------------------------------------
if strcmp( get(hObject, 'checked'), 'on' )
% set preference autoload off (unchecked)
% ---------------------------------------
root.preference.autoload = 'off';
else
% set preference autoload on (checked)
% ------------------------------------
root.preference.autoload = 'on';
end
% set current option/preference submenu state
% -------------------------------------------
set(hObject, 'checked', root.preference.autoload);
% store root struct to root UserData
% ----------------------------------
set(0, 'userdata', root);
end

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%% HeaderMenuCallback

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% -------------------------------------------------------------------
% Callback function run when the headerForm tool bar item is selected
% -------------------------------------------------------------------

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function HeaderMenuCallback(hObject, eventdata)

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% call header form function
% -------------------------
headerForm(hMainFig);

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end
%% SaveMenuCallback

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% -------------------------------------------------------------------
% Callback function run when the Save menu item is selected
% -------------------------------------------------------------------

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function SaveMenuCallback(hObject, eventdata)

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% Retrieve named application data
% -------------------------------
tsg = getappdata( hMainFig, 'tsg_data');
% get fileName without extension in cell
% --------------------------------------
file = textscan( tsg.file.name,'%s','delimiter','.');

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% fill or append header form
% -------------------------
error = headerForm(hMainFig);
% if user press continue button, ask for netcdf file
% ------------------------------------------------
if error ~= -1
[fileName, pathName, filterIndex] = uiputfile('*.nc', ...

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'Save file name', [file{1}{1} '.nc']);

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% if user press cancel button, all var set to zero
% ------------------------------------------------
if fileName == 0
return;
end
% Pointer set to watch during reading and plotting
% ------------------------------------------------
set( hMainFig, 'Pointer', 'watch' );
% flushes the event queue and updates the closed uiputfile window
% ---------------------------------------------------------------
drawnow;
% write netcdf file
% -----------------

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error = writeTSGDataNetCDF( hMainFig, [pathName fileName] );

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% Pointer reset to arrow
% ----------------------
set( hMainFig, 'Pointer', 'arrow' );
% Check for NetCDF writing error

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% must to be rewriting
% ------------------------------

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if error == -1
warning('tsgqc_GUI:SaveMenuCallback', ...
'NetCDF writing error: %s %s', pathName, fileName);

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return;

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% update the display
% ------------------
set( hInfoFileText, 'String', fileName);

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% enable Quality Control mode
% ---------------------------
hdl_pushtool = findobj('Tag', 'QC');
set(hdl_pushtool, 'Enable', 'on');

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end
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%% UndoMenuCallback
% -----------------------------------------------------------------------
% Callback function run when the Edit/Undo menu item is selected (Ctrl+Z)
% -----------------------------------------------------------------------
function UndoMenuCallback(hObject, eventdata)
% Undo module not yet implemented
% -------------------------------
% msgbox('Undo module not yet implemented', 'modal');
tsg.queue = undo(tsg.queue);
tsg.SSPS_QC = get(tsg.queue);
% Make the Salinity, temperature and velocity plot
% ------------------------------------------------
plot_SalTempVel( hMainFig, hPlotAxes );
end
%% RedoMenuCallback
% -----------------------------------------------------------------------
% Callback function run when the Edit/Redo menu item is selected (Ctrl+R)
% -----------------------------------------------------------------------
function RedoMenuCallback(hObject, eventdata)
% Redo module not yet implemented
% -------------------------------
msgbox('Redo module not yet implemented', 'modal');
end
%% QuitMenuCallback

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% -----------------------------------------------------------------
% Callback function run when the Quit menu item is selected
% -----------------------------------------------------------------
function QuitMenuCallback(hObject, eventdata)
% get root struct from root object
% --------------------------------
root = get(0,'Userdata');
% save config mat file in prefdir
% -------------------------------
config_file = [prefdir, filesep, tsgqcname, '.mat'];
% set tsg.levitus empty before save preferences in mat file
% ---------------------------------------------------------
tsg.levitus = [];
% save preference mat file
% ------------------------
save( config_file, 'root', 'tsg');

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% If the data have been modified and not save, the program

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% ask to save the data

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% --------------------------------------------------------
if strcmp( get( hSaveMenu, 'UserData' ), 'on')
selection = ...
questdlg('The file has been modified. Do you want to save it ?',...
'Save before Quit?',...
'Yes', 'No', 'Yes');

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if strcmp(selection, 'Yes')
% call File/Save Menu Callback before before quit
% -----------------------------------------------
SaveMenuCallback;

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end
% quit program
% ------------
QuitProgram;

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else
selection = ...
questdlg(['Quit ' get(hMainFig, 'Name') '?'],...
['Quit ' get(hMainFig, 'Name') '?'],...
'Yes', 'No', 'Yes');
if strcmp(selection, 'No')
return;
else
QuitProgram;
end

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end

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end
%% QuitProgram

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% -----------------------------------------------------------------
% call from:
% QuitMenuCallback
% callback 'CloseRequestFcn', @QuitProgram

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% -----------------------------------------------------------------

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function QuitProgram(hObject, eventdata)

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% close the main windows
% ----------------------

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delete(hMainFig);
% reset userdata property of root Matalab object (0) for next use
% ---------------------------------------------------------------
set(0, 'userdata', []);

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% reset Matlab search path to default

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% -----------------------------------

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rmpath( [DEFAULT_PATH_FILE filesep 'tsg_util'] );
rmpath( [DEFAULT_PATH_FILE filesep 'tsg_data'] );
rmpath( [DEFAULT_PATH_FILE filesep 'tsg_io'] );

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% Refresh file system caches
% --------------------------

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rehash;

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end

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% end of tsgqc_GUI
% ----------------
end