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TRANSVIHMI
nfernandez
GeVarLi
Commits
38d1268e
Commit
38d1268e
authored
2 months ago
by
nicolas.fernandez_ird.fr
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Typo: add some space in messages printed
parent
d75cd8be
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Pipeline
#75933
passed
2 months ago
Stage: deploy
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Run_GeVarLi.sh
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Run_GeVarLi.sh
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Run_GeVarLi.sh
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38d1268e
...
@@ -183,8 +183,8 @@ else # If not, create it.
...
@@ -183,8 +183,8 @@ else # If not, create it.
${
ylo
}
Workflow-Core
${
nc
}
conda environment will be create, with:
${
ylo
}
Workflow-Core
${
nc
}
conda environment will be create, with:
>
${
red
}
Snakemake
${
nc
}
(workflow manager)
>
${
red
}
Snakemake
${
nc
}
(workflow manager)
>
${
red
}
Yq
${
nc
}
(yaml parser)
>
${
red
}
Yq
${
nc
}
(yaml parser)
>
${
red
}
GraphViz
${
nc
}
(drawing graph)
>
${
red
}
GraphViz
${
nc
}
(drawing graph)
"
"
conda
env
create
--file
${
workdir
}
/workflow/envs/workflow-core.yaml
>
/dev/null 2>&1
conda
env
create
--file
${
workdir
}
/workflow/envs/workflow-core.yaml
>
/dev/null 2>&1
fi
fi
...
@@ -374,7 +374,8 @@ for fastq in ${workdir}/resources/reads/*.fastq.gz; do
...
@@ -374,7 +374,8 @@ for fastq in ${workdir}/resources/reads/*.fastq.gz; do
done
done
echo
-e
"
echo
-e
"
If you want to keep Illumina
${
blue
}
barcode-ID
${
nc
}
and/or Illumina
${
blue
}
line-ID
${
nc
}
, please edit
${
ylo
}
Run_GeVarLi.sh
${
nc
}
script (l.335).
If you want to keep Illumina
${
blue
}
barcode-ID
${
nc
}
and/or Illumina
${
blue
}
line-ID
${
nc
}
,
please edit
${
ylo
}
Run_GeVarLi.sh
${
nc
}
script (section symlinks, l.370).
"
"
...
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