- Mar 08, 2024
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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- Feb 16, 2024
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aurore.comte_ird.fr authored
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- Feb 15, 2024
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
Resolve "add htseq-count as counter" Closes #5 See merge request !6
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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- Feb 14, 2024
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
Integration of STAR as mapper. Closes #4 See merge request !4
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
-remove todo
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aurore.comte_ird.fr authored
- modification of stringtie rules to use hisat2 output and star output - add in config file the possibility to use the pipeline in one shot or in comparison mode
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- Feb 13, 2024
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aurore.comte_ird.fr authored
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- Feb 12, 2024
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aurore.comte_ird.fr authored
- fastq.gz should be uncompressed for star - changer genomedir for star mapping
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aurore.comte_ird.fr authored
- 1 rule index - 1 rule star_single - 1 rule star_paired add star in singularity
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- Feb 09, 2024
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aurore.comte_ird.fr authored
Resolve "manage single and paired" Closes #3 See merge request !3
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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- Jan 26, 2024
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
Resolve "snakecdysis integration" Closes #2 See merge request !1
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- Jan 19, 2024
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aurore.comte_ird.fr authored
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aurore.comte_ird.fr authored
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
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julie.orjuela_ird.fr authored
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- Sep 23, 2022
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Aurore Comte authored
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Aurore Comte authored
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Aurore Comte authored
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- May 23, 2022
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Aucomte authored
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