doc

docs/source/SupplementaryFiles/RNAja

+#%Module1.0
+##
+
+## Required internal variables
+set     prefix       $env(HOME)/softs/CulebrONT_pipeline
+set     version      "0.1.0"
+
+# check if install directory exist
+if {![file exists $prefix]} {
+    puts stderr "\t[module-info name] Load Error: $prefix does not exist"
+    break
+    exit 1
+}
+
+## List conflicting modules here
+## conflict RNAja
+
+## List prerequisite modules here
+module load singularity
+module load python/3.7
+module load graphviz/2.40.1
+#module load snakemake/5.19.2
+
+set		fullname	RNAja-0.1.0
+set		externalurl	"\n\thttps://RNAja-pipeline.readthedocs.io/en/latest/\n"
+
+## Required for "module help ..."
+proc ModulesHelp { } {
+  global description externalurl
+  puts stderr "Description - $description"
+  puts stderr "More Docs   - $externalurl"
+}
+
+## Required for "module display ..." and SWDB
+module-whatis   "loads the [module-info name] environment"
+
+## Software-specific settings exported to user environment
+
+prepend-path PATH $prefix
+prepend-path RNAja $prefix

docs/source/_static/logo.css

+/** css/yourtheme.css **/
+
+/* This line is theme specific - it includes the base theme CSS */
+@import 'theme.css';       /* for the Read the Docs theme */
+
+
+.wy-side-nav-search .wy-dropdown > a img.logo, .wy-side-nav-search > a img.logo {
+	display: block;
+	margin: 0 auto;
+	height: auto;
+	width: auto;
+	border-radius: 0;
+	max-width: 50% !important;
+	background: transparent;
+}
+
+.wy-table-responsive table td, .wy-table-responsive table th {
+	 white-space: break-spaces;
+}
+
+.rst-content .linenodiv pre, .rst-content div[class^="highlight"] pre, .rst-content pre.literal-block {
+	font-family: SFMono-Regular,Menlo,Monaco,Consolas,Liberation Mono,Courier New,Courier,monospace;
+	font-size: 12px;
+	line-height: 1.4;
+	white-space: break-spaces;
+}
\ No newline at end of file

docs/source/conf.py

@@ -24,7 +24,7 @@ version = RNAja.__version__
 release = RNAja.__version__
 
 #rst_prolog = f"""
-#.. |tools_path| replace:: {RNAJA_TOOLS_PATH}
+#.. |tools_path| replace:: {GIT_TOOLS_PATH}
 #"""
 
 # -- Project information -----------------------------------------------------