From b8317407159f0eb1d5794302753a5642747be131 Mon Sep 17 00:00:00 2001
From: aucomte <aurore.f.comte@gmail.com>
Date: Wed, 2 Mar 2022 12:38:45 +0100
Subject: [PATCH] doc
---
docs/source/SupplementaryFiles/RNAja | 40 ++++++++++++++++++++++++++++
docs/source/_static/logo.css | 26 ++++++++++++++++++
docs/source/conf.py | 2 +-
3 files changed, 67 insertions(+), 1 deletion(-)
create mode 100644 docs/source/SupplementaryFiles/RNAja
create mode 100644 docs/source/_static/logo.css
diff --git a/docs/source/SupplementaryFiles/RNAja b/docs/source/SupplementaryFiles/RNAja
new file mode 100644
index 0000000..b15dbfa
--- /dev/null
+++ b/docs/source/SupplementaryFiles/RNAja
@@ -0,0 +1,40 @@
+#%Module1.0
+##
+
+## Required internal variables
+set prefix $env(HOME)/softs/CulebrONT_pipeline
+set version "0.1.0"
+
+# check if install directory exist
+if {![file exists $prefix]} {
+ puts stderr "\t[module-info name] Load Error: $prefix does not exist"
+ break
+ exit 1
+}
+
+## List conflicting modules here
+## conflict RNAja
+
+## List prerequisite modules here
+module load singularity
+module load python/3.7
+module load graphviz/2.40.1
+#module load snakemake/5.19.2
+
+set fullname RNAja-0.1.0
+set externalurl "\n\thttps://RNAja-pipeline.readthedocs.io/en/latest/\n"
+
+## Required for "module help ..."
+proc ModulesHelp { } {
+ global description externalurl
+ puts stderr "Description - $description"
+ puts stderr "More Docs - $externalurl"
+}
+
+## Required for "module display ..." and SWDB
+module-whatis "loads the [module-info name] environment"
+
+## Software-specific settings exported to user environment
+
+prepend-path PATH $prefix
+prepend-path RNAja $prefix
diff --git a/docs/source/_static/logo.css b/docs/source/_static/logo.css
new file mode 100644
index 0000000..7845e01
--- /dev/null
+++ b/docs/source/_static/logo.css
@@ -0,0 +1,26 @@
+/** css/yourtheme.css **/
+
+/* This line is theme specific - it includes the base theme CSS */
+@import 'theme.css'; /* for the Read the Docs theme */
+
+
+.wy-side-nav-search .wy-dropdown > a img.logo, .wy-side-nav-search > a img.logo {
+ display: block;
+ margin: 0 auto;
+ height: auto;
+ width: auto;
+ border-radius: 0;
+ max-width: 50% !important;
+ background: transparent;
+}
+
+.wy-table-responsive table td, .wy-table-responsive table th {
+ white-space: break-spaces;
+}
+
+.rst-content .linenodiv pre, .rst-content div[class^="highlight"] pre, .rst-content pre.literal-block {
+ font-family: SFMono-Regular,Menlo,Monaco,Consolas,Liberation Mono,Courier New,Courier,monospace;
+ font-size: 12px;
+ line-height: 1.4;
+ white-space: break-spaces;
+}
\ No newline at end of file
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 95eb5db..4d94b73 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -24,7 +24,7 @@ version = RNAja.__version__
release = RNAja.__version__
#rst_prolog = f"""
-#.. |tools_path| replace:: {RNAJA_TOOLS_PATH}
+#.. |tools_path| replace:: {GIT_TOOLS_PATH}
#"""
# -- Project information -----------------------------------------------------
--
GitLab