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Commit fe27cc93 authored by ndomassi.tando_ird.fr's avatar ndomassi.tando_ird.fr
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modification bioinfo-master1 par bioinfo-san

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......@@ -4,16 +4,27 @@
For the following exercises, we will use the IRD HPC infrastructure.
The IRD HPC allows the connection to the master node.
`bioinfo-master1.ird.fr`
The IRD HPC allows the connection to the storage node.
`bioinfo-san.ird.fr`
We will need to connect first to this server, and then work remotely from it.
!!! question "Connect to the IRD cluster using `ssh` and your `formationX` account"
!!! question "Connect to `bioinfo-san.ird.fr` node using `ssh` and your `formationX` account"
??? example "Click to show the solution"
`ssh formationX@bioinfo-san.ird.fr`
Open another terminal session to connect to the master node : `bioinfo-master1.ird.fr`
!!! question "Connect to `bioinfo-master1.ird.fr` node using `ssh` and your `formationX` account"
??? example "Click to show the solution"
`ssh formationX@bioinfo-master1.ird.fr`
!!! question "What are the main differences between the 2 sessions?"
??? example "Click to show the solution"
`Prompt is different, bioinfo-master1.ird.fr as a welcome message`
## Transfering files using Filezilla
......@@ -40,22 +51,22 @@ In the FileZilla menu, go to File > Site Manager. Then go through these 5 steps:
## Transfering files (scp)
!!! question "Using `scp`, transfer a file from your computer to the cluster into the home directory of the `formationX` account"
!!! question "Using `scp`, transfer a file from your computer to the cluster into the `/users/formationX` directory of the `formationX` account"
??? example "Click to show the solution"
`scp /home/<userName>/filename formationX@bioinfo-master1.ird.fr:/home/formationX`
`scp -r /users/<userName>/filename formationX@bioinfo-san.ird.fr:/home/formationX`
!!! question "Using `scp`, transfer the file `/share/formation/HPC_french.pdf` from the cluster to your computer in your home directory"
??? example "Click to show the solution"
`scp formationX@bioinfo-master1.ird.fr:/share/formation/HPC_french.pdf /home/<userName>`
`scp -r formationX@bioinfo-san.ird.fr:/share/formation/HPC_french.pdf /users/<userName>`
## Retrieving data from a remote server (wget)
From the IRD HPC cluster, we will get new datasets for the following exercises.
For doing that, we can use the `wget` command to automatically download a zipped file (containing these new datasets) available from a URL.
!!! question "Using `wget` command, download the new datasets available at this address: `http://itrop.ird.fr/LINUX-TP/LINUX-TP.tar.gz`"
!!! question "Using `wget` command, download the new datasets available at this address: `http://itrop.ird.fr/LINUX-TP/LINUX-TP.tar.gz` in your `/users/formationX/folder`"
??? example "Click to show the solution"
`wget http://itrop.ird.fr/LINUX-TP/LINUX-TP.tar.gz`
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