From fe27cc931b49ae86ea8ee5cbe78fc2ab9f457043 Mon Sep 17 00:00:00 2001
From: "ndomassi.tando_ird.fr" <ndomassi.tando@ird.fr>
Date: Tue, 26 Nov 2024 10:00:30 +0000
Subject: [PATCH] modification bioinfo-master1 par bioinfo-san
---
docs/pages/bash/bash-connecting_remote.md | 25 ++++++++++++++++-------
1 file changed, 18 insertions(+), 7 deletions(-)
diff --git a/docs/pages/bash/bash-connecting_remote.md b/docs/pages/bash/bash-connecting_remote.md
index f07e9c3..37e3e03 100644
--- a/docs/pages/bash/bash-connecting_remote.md
+++ b/docs/pages/bash/bash-connecting_remote.md
@@ -4,16 +4,27 @@
For the following exercises, we will use the IRD HPC infrastructure.
-The IRD HPC allows the connection to the master node.
-`bioinfo-master1.ird.fr`
+The IRD HPC allows the connection to the storage node.
+`bioinfo-san.ird.fr`
We will need to connect first to this server, and then work remotely from it.
-!!! question "Connect to the IRD cluster using `ssh` and your `formationX` account"
+!!! question "Connect to `bioinfo-san.ird.fr` node using `ssh` and your `formationX` account"
+
+??? example "Click to show the solution"
+ `ssh formationX@bioinfo-san.ird.fr`
+
+Open another terminal session to connect to the master node : `bioinfo-master1.ird.fr`
+
+!!! question "Connect to `bioinfo-master1.ird.fr` node using `ssh` and your `formationX` account"
??? example "Click to show the solution"
`ssh formationX@bioinfo-master1.ird.fr`
+!!! question "What are the main differences between the 2 sessions?"
+
+??? example "Click to show the solution"
+ `Prompt is different, bioinfo-master1.ird.fr as a welcome message`
## Transfering files using Filezilla
@@ -40,22 +51,22 @@ In the FileZilla menu, go to File > Site Manager. Then go through these 5 steps:
## Transfering files (scp)
-!!! question "Using `scp`, transfer a file from your computer to the cluster into the home directory of the `formationX` account"
+!!! question "Using `scp`, transfer a file from your computer to the cluster into the `/users/formationX` directory of the `formationX` account"
??? example "Click to show the solution"
- `scp /home/<userName>/filename formationX@bioinfo-master1.ird.fr:/home/formationX`
+ `scp -r /users/<userName>/filename formationX@bioinfo-san.ird.fr:/home/formationX`
!!! question "Using `scp`, transfer the file `/share/formation/HPC_french.pdf` from the cluster to your computer in your home directory"
??? example "Click to show the solution"
- `scp formationX@bioinfo-master1.ird.fr:/share/formation/HPC_french.pdf /home/<userName>`
+ `scp -r formationX@bioinfo-san.ird.fr:/share/formation/HPC_french.pdf /users/<userName>`
## Retrieving data from a remote server (wget)
From the IRD HPC cluster, we will get new datasets for the following exercises.
For doing that, we can use the `wget` command to automatically download a zipped file (containing these new datasets) available from a URL.
-!!! question "Using `wget` command, download the new datasets available at this address: `http://itrop.ird.fr/LINUX-TP/LINUX-TP.tar.gz`"
+!!! question "Using `wget` command, download the new datasets available at this address: `http://itrop.ird.fr/LINUX-TP/LINUX-TP.tar.gz` in your `/users/formationX/folder`"
??? example "Click to show the solution"
`wget http://itrop.ird.fr/LINUX-TP/LINUX-TP.tar.gz`
--
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