Explore projects

See https://marbec.pages.ird.fr/ob7/observe/observe-app/

Application of the FAO-56 formalism with used of remote-sensing daily NDVI forcing to estimate evapotranspiration and irrigation amounts at field scale . Main formalism is from SAMIR tool (CESBIO Lab).

See https://marbec.pages.ird.fr/ob7/observe/observe-toolkit/

UX for AKaDO

https://akador.ob7.ird.fr

Simple utility to download and process Sentinel-2 images

A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)

Materials for Learning Bioinformatics and Enhancing Competencies - Unix - basics, data/file manipulation, bash scripting https://mivegec.pages.ird.fr/dainat/malbec-unix/

GraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.

RADO website repository. Website available at https://rado.pages.ird.fr/website

Image analysis of microscope spore with YOLO

Shiny app is an interactive Exploratory Data Analysis (EDA) tool

Link: https://viznshine.ob7.ird.fr

Extension pour le système de production de document Quarto