Explore projects
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DIADE / culebront_pipeline
GNU General Public License v3.0 or laterdojo snakemake assemblage long reads
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PHIM / sravel / Snakecdysis
MIT LicenseAre you looking for a simplified installation process for your Snakemake workflows, including the various Python packages and the multitude of tools used by your pipelines?
Would you like to simplify the use of your workflows with user-friendly commands and subcommands that even non-bioinformatician users can easy use? Look no further - Snakecdysis is the solution for you!
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ESPACE-DEV / Sen2Chain
GNU General Public License v3.0 or laterSimple utility to download and process Sentinel-2 images
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TRANSVIHMI / nfernandez / GeVarLi
GNU Affero General Public License v3.0GeVarLi pipeline for AFROSCREEN ANRS
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DIADE / dynadiv / GrAnnoT
MIT LicenseUpdated -
PHIM / RNAja-pipeline
GNU General Public License v3.0 or laterUpdated -
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A, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)
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PHIM / dereeper / SampleTracker
MIT LicenseUpdated -
PHIM / sravel / PodiumASM
MIT LicenseLong-read sequencing is a highly accurate approach that can be used to challenging genomes, such as those containing stretches of highly repetitive elements and lot of structural variant. Long read sequencing can also be used to generate de novo assembly and genome finishing applications Lot of tools are used to make genome assembly with long reads every day and sometimes you don't know wich Assembler tool is the best for your organism. PodiumASM is here for you ! PodiumASM is is an open-source, scalable, modulable and traceable snakemake pipeline, able to compare multiple long read assemblies obtained from multiple assemblers tools. The workflow PodiumASM can help you to choose the best assemblies among all possibilities.
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TRANSVIHMI / nfernandez / Reads_Quality_Control
GNU Affero General Public License v3.0Reads Quality Control (RQC) allow raw NGS reads quality control, before continue with more downstream analysis.
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AMAPVox, LiDAR data voxelisation software
Copyright (c) https://www.ird.fr (Institut de Recherche pour le Développement) 2016-2022
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DIADE / Recombination_landscape / PopSimul
GNU Affero General Public License v3.0Updated -
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PHIM / sravel / RattleSNP
GNU General Public License v3.0 or latersnakemake workflow for mappind single/paired datas
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