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DIADE / GraTools
GNU General Public License v3.0 or laterGraTools is a powerful tool for analyzing and handling pangenome graphs quickly, whatever the model' and therefore the size and the complexity of the GFA file. It allows users to extract sequences or subgraphs, convert graphs into FASTA sequences, and identify shared and specific nodes across samples. Additionally, it provides essential statistics for chromosomes and samples data. With multi-threading support and flexible logging capabilities, Gratools is an efficient solution for pangenome graph analysis.
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ESPACE-DEV / Sen2Chain
GNU General Public License v3.0 or laterSimple utility to download and process Sentinel-2 images
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PHIM / sravel / spore_detect
GNU General Public License v3.0 or laterImage analysis of microscope spore with YOLO
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DIADE / dynadiv / GrAnnoT
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Application of the FAO-56 formalism with used of remote-sensing daily NDVI forcing to estimate evapotranspiration and irrigation amounts at field scale . Main formalism is from SAMIR tool (CESBIO Lab).
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PHIM / sravel / RattleSNP
GNU General Public License v3.0 or latersnakemake workflow for mappind single/paired datas
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TRANSVIHMI / nfernandez / GeVarLi
GNU Affero General Public License v3.0GeVarLi : GEnome assembly, VARiant calling and LIneage assignation. https://transvihmi.pages.ird.fr/nfernandez/GeVarLi/en
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PHIM / sravel / Snakecdysis
MIT LicenseAre you looking for a simplified installation process for your Snakemake workflows, including the various Python packages and the multitude of tools used by your pipelines?
Would you like to simplify the use of your workflows with user-friendly commands and subcommands that even non-bioinformatician users can easy use? Look no further - Snakecdysis is the solution for you!
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PHIM / cunnac / genomicsR
MIT LicenseA, still very experimental, R package that acts as a storage location for functions and interfaces in connection with genomics (genomes, transcriptomes, annotation, phylogenomics, ...)
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PHIM / rymvdb
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