modifié pour le lancer avec les données du nouveau graphe

main.py

 import Functions as fct
 
-intersect_path='../wd/data/intersect_all_chr10.bed'
+# creates segments and features for the intersect between the graph for chr10 and the gff of IRGSP
+intersect_path='/home/nina/annotpangenome/align_genes/intersect_segments-genes_chr10.bed'
 fct.create_seg_feat(intersect_path)
 
-output_file='graphe_chr10_all.gff'
+# outputs the gff of the graph for chr10
+output_file='graphe_test.gff'
 fct.graph_gff(output_file)
 
-pos_seg="pos_seg_azu.bed"
-gff="graphe_chr10_all.gff"
-out="azucena_chr10_all.gff"
-fct.azu(pos_seg,gff,out)
+#pos_seg="pos_seg_azu.bed"
+#gff="graphe_chr10_all.gff"
+#out="azucena_chr10_all.gff"
+#fct.azu(pos_seg,gff,out)