From 2f8b67d4a1dc846f89b2d30c1dfcd43786265c65 Mon Sep 17 00:00:00 2001
From: NMarthe <nina.marthe34@gmail.com>
Date: Fri, 21 Apr 2023 16:06:05 +0200
Subject: [PATCH] =?UTF-8?q?modifi=C3=A9=20pour=20le=20lancer=20avec=20les?=
 =?UTF-8?q?=20donn=C3=A9es=20du=20nouveau=20graphe?=
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---
 main.py | 14 ++++++++------
 1 file changed, 8 insertions(+), 6 deletions(-)

diff --git a/main.py b/main.py
index 56e3162..dcfc137 100644
--- a/main.py
+++ b/main.py
@@ -1,12 +1,14 @@
 import Functions as fct
 
-intersect_path='../wd/data/intersect_all_chr10.bed'
+# creates segments and features for the intersect between the graph for chr10 and the gff of IRGSP
+intersect_path='/home/nina/annotpangenome/align_genes/intersect_segments-genes_chr10.bed'
 fct.create_seg_feat(intersect_path)
 
-output_file='graphe_chr10_all.gff'
+# outputs the gff of the graph for chr10
+output_file='graphe_test.gff'
 fct.graph_gff(output_file)
 
-pos_seg="pos_seg_azu.bed"
-gff="graphe_chr10_all.gff"
-out="azucena_chr10_all.gff"
-fct.azu(pos_seg,gff,out)
+#pos_seg="pos_seg_azu.bed"
+#gff="graphe_chr10_all.gff"
+#out="azucena_chr10_all.gff"
+#fct.azu(pos_seg,gff,out)
-- 
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