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Jeremy Auclair
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"\n",
" <div style=\"\">\n",
" <div>\n",
" <div style=\"width: 24px; height: 24px; background-color: #FFF7E5; border: 3px solid #FF6132; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <h3 style=\"margin-bottom: 0px;\">Scheduler</h3>\n",
" <p style=\"color: #9D9D9D; margin-bottom: 0px;\">Scheduler-d5ec5b54-f595-40fe-a4fe-ab30a54fb158</p>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm:</strong> tcp://127.0.0.1:32951\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Workers:</strong> 4\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard:</strong> <a href=\"http://127.0.0.1:8787/status\" target=\"_blank\">http://127.0.0.1:8787/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads:</strong> 8\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Started:</strong> Just now\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total memory:</strong> 23.47 GiB\n",
" </td>\n",
" </tr>\n",
" </table>\n",
" </div>\n",
" </div>\n",
"\n",
" <details style=\"margin-left: 48px;\">\n",
" <summary style=\"margin-bottom: 20px;\">\n",
" <h3 style=\"display: inline;\">Workers</h3>\n",
" </summary>\n",
"\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 0</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:45105\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 2\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:42443/status\" target=\"_blank\">http://127.0.0.1:42443/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 5.87 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:37411\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-v5s639lg\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 1</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:36993\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 2\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:40175/status\" target=\"_blank\">http://127.0.0.1:40175/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 5.87 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:45519\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-0cke1ycu\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 2</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:36987\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 2\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:45413/status\" target=\"_blank\">http://127.0.0.1:45413/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 5.87 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:42671\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-2gvmrt11\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
" <div style=\"margin-bottom: 20px;\">\n",
" <div style=\"width: 24px; height: 24px; background-color: #DBF5FF; border: 3px solid #4CC9FF; border-radius: 5px; position: absolute;\"> </div>\n",
" <div style=\"margin-left: 48px;\">\n",
" <details>\n",
" <summary>\n",
" <h4 style=\"margin-bottom: 0px; display: inline;\">Worker: 3</h4>\n",
" </summary>\n",
" <table style=\"width: 100%; text-align: left;\">\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Comm: </strong> tcp://127.0.0.1:40491\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Total threads: </strong> 2\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Dashboard: </strong> <a href=\"http://127.0.0.1:33959/status\" target=\"_blank\">http://127.0.0.1:33959/status</a>\n",
" </td>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Memory: </strong> 5.87 GiB\n",
" </td>\n",
" </tr>\n",
" <tr>\n",
" <td style=\"text-align: left;\">\n",
" <strong>Nanny: </strong> tcp://127.0.0.1:37215\n",
" </td>\n",
" <td style=\"text-align: left;\"></td>\n",
" </tr>\n",
" <tr>\n",
" <td colspan=\"2\" style=\"text-align: left;\">\n",
" <strong>Local directory: </strong> /tmp/dask-scratch-space/worker-iv3e92vj\n",
" </td>\n",
" </tr>\n",
"\n",
" \n",
"\n",
" \n",
"\n",
" </table>\n",
" </details>\n",
" </div>\n",
" </div>\n",
" \n",
"\n",
" </details>\n",
"</div>\n",
"\n",
" </details>\n",
" </div>\n",
"</div>\n",
" </details>\n",
" \n",
"\n",
" </div>\n",
"</div>"
],
"text/plain": [
"<Client: 'tcp://127.0.0.1:32951' processes=4 threads=8, memory=23.47 GiB>"
]
},
"execution_count": 3,
"metadata": {},
"output_type": "execute_result"
}
],
Jeremy Auclair
committed
"client = Client(interface='lo')\n",
"client"
]
},
{
"cell_type": "code",
Jeremy Auclair
committed
"execution_count": 4,
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"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"/home/auclairj/anaconda3/envs/modspa_pixel/lib/python3.10/site-packages/dask/array/chunk.py:278: RuntimeWarning: invalid value encountered in cast\n",
" return x.astype(astype_dtype, **kwargs)\n",
"/home/auclairj/anaconda3/envs/modspa_pixel/lib/python3.10/site-packages/dask/array/chunk.py:278: RuntimeWarning: invalid value encountered in cast\n",
" return x.astype(astype_dtype, **kwargs)\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"day 1/ 366 \r"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/home/auclairj/anaconda3/envs/modspa_pixel/lib/python3.10/site-packages/dask/array/chunk.py:278: RuntimeWarning: invalid value encountered in cast\n",
" return x.astype(astype_dtype, **kwargs)\n",
"/home/auclairj/anaconda3/envs/modspa_pixel/lib/python3.10/site-packages/dask/array/chunk.py:278: RuntimeWarning: invalid value encountered in cast\n",
" return x.astype(astype_dtype, **kwargs)\n",
"/tmp/ipykernel_1387/2938761162.py:242: RuntimeWarning: divide by zero encountered in divide\n",
" tmp1 = (((TAW - Dr) / Zr - (RUE - De) / (scale_dict['Ze'] * Ze_)) / FCov) * (scale_dict['DiffE'] * DiffE_)\n",
"/tmp/ipykernel_1387/2938761162.py:285: RuntimeWarning: divide by zero encountered in divide\n",
" tmp1 = (((TDW - Dd) / (scale_dict['Zsoil'] * Zsoil_ - Zr) - (TAW - Dr) / Zr) / FCov) * scale_dict['DiffR'] * DiffR_\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"day 3 / 366 \r"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
"/home/auclairj/anaconda3/envs/modspa_pixel/lib/python3.10/site-packages/dask/array/chunk.py:278: RuntimeWarning: invalid value encountered in cast\n",
" return x.astype(astype_dtype, **kwargs)\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"day 366 / 366 \r"
]
}
],
"source": [
"data_path = '/mnt/e/DATA/DEV_inputs_test'\n",
"\n",
Jeremy Auclair
committed
"size = 100\n",
"\n",
"ndvi_path = data_path + os.sep + 'ndvi_' + str(size) + '.nc'\n",
"prec_path = data_path + os.sep + 'rain_' + str(size) + '.tif'\n",
"ET0_path = data_path + os.sep + 'ET0_' + str(size) + '.tif'\n",
"land_cover_path = data_path + os.sep + 'land_cover_' + str(size) + '.nc'\n",
"json_config_file = '/home/auclairj/GIT/modspa-pixel/config/config_modspa.json'\n",
"param_file = '/home/auclairj/GIT/modspa-pixel/parameters/csv_files/params_samir_test.csv'\n",
Jeremy Auclair
committed
"soil_path = data_path + os.sep + 'soil_' + str(size) + '.nc'\n",
"save_path = data_path + os.sep + 'outputs_' + str(size) + '.nc'\n",
"\n",
"chunk_size = {'x': 50, 'y': 50, 'time': -1}\n",
"\n",
"t = time()\n",
"\n",
Jeremy Auclair
committed
"run_samir(json_config_file, param_file, ndvi_path, prec_path, ET0_path, soil_path, land_cover_path, chunk_size, save_path)\n",
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"format_duration(time() - t)\n",
Jeremy Auclair
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"client.close()"
Jeremy Auclair
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"execution_count": 6,
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"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"/mnt/e/DATA/DEV_inputs_test/outputs_10.nc\n"
]
}
],
Jeremy Auclair
committed
"print(save_path)"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
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}
],
"metadata": {
"kernelspec": {
"display_name": "modspa_pixel",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.10.9"
},
"orig_nbformat": 4
},
"nbformat": 4,
"nbformat_minor": 2
}