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Commit f865945d authored by jacques.grelet_ird.fr's avatar jacques.grelet_ird.fr
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file_extractor.py
+ 2
− 2
View file @ f865945d
......@@ -69,7 +69,7 @@ class FileExtractor:
for file in self.fname:
with fileinput.input(
file.name, openhook=fileinput.hook_encoded("ISO-8859-1")) as f:
file, openhook=fileinput.hook_encoded("ISO-8859-1")) as f:
filesRead += 1
for line in f:
if line[0] == '#' or line[0] == '*':
......@@ -123,7 +123,7 @@ class FileExtractor:
for file in self.fname:
with fileinput.input(
file.name, openhook=fileinput.hook_encoded("ISO-8859-1")) as f:
file, openhook=fileinput.hook_encoded("ISO-8859-1")) as f:
for line in f:
if f.filelineno() < self.__skip_header + 1:
continue
......
oceano.py
+ 58
− 46
View file @ f865945d
......@@ -14,6 +14,8 @@ import distutils.util as du
typeInstrument = {'CTD': ('cnv', 'CNV'), 'XBT': (
'EDF', 'edf'), 'LADCP': ('lad', 'LAD'), 'TSG': 'COLCOR'}
ti = typeInstrument # an alias
filesBrowsePosition_row = 2
filesBrowsePosition_column = 1
def processArgs():
......@@ -22,18 +24,18 @@ def processArgs():
following ROSCOP codification at the given column, fill arrays, write header file ',
usage='\npython oceano.py data/CTD/cnv/dfr2900[1-3].cnv -i CTD -d\n'
'python oceano.py data/CTD/cnv/dfr2900[1-3].cnv -i CTD -k PRES TEMP PSAL DOX2 DENS\n'
'python oceano.py data/CTDcnv/dfr29*.cnv -d\n'
'python oceano.py data/CTDcnv/dfr29*.cnv -i CTD -d\n'
'python oceano.py data/XBT/T7_0000*.EDF -i XBT -k DEPTH TEMP SVEL\n'
'python oceano.py data/LADCP/*.lad - i LADCP - k DEPTH EWCT NSCT\n'
' \n',
epilog='J. Grelet IRD US191 - March 2019')
parser.add_argument('-d', '--debug', help='display debug informations',
action='store_true')
parser.add_argument('--demo', nargs='?',
parser.add_argument('--demo', nargs='?', choices=ti.keys(),
help='specify the commande line for instrument, eg CTD, XBT, TSG, LADCP')
parser.add_argument('-c', '--config', help="toml configuration file, (default: %(default)s)",
default='tests/test.toml')
parser.add_argument('-i', '--instrument', nargs='?',
parser.add_argument('-i', '--instrument', nargs='?', choices=ti.keys(),
help='specify the instrument that produce files, eg CTD, XBT, TSG, LADCP')
parser.add_argument('-k', '--key', nargs='+', default=['PRES', 'TEMP', 'PSAL'],
help='display dictionary for key(s), (default: %(default)s)')
......@@ -61,32 +63,23 @@ def defineGUI():
# define a frame layout for each instrument (device)
for d in devices:
keys = cfg['split'][d.lower()].keys()
frameLayout[d] = [* [[sg.Checkbox(k, key=k,
tooltip='Select the extract the physical parameter {}'.format(k))] for k in keys]]
# for d in devices:
# deviceLayout[d] = [sg.Frame(d, frameLayout[d])]
# List comprehensions
frameLayout[d] = [[sg.Checkbox(k, key=k,
tooltip='Select the extract the physical parameter {}'.format(k))] for k in keys]
# define GUI layout
layout = ([[sg.Text('File(s) to read and convert')],
[sg.Multiline(size=(40, 5), key='_IN_'),
sg.Input(key='_HIDDEN_', visible=False,
layout = ([[sg.Text('File(s) to read and convert')], # row 0
[sg.Multiline(size=(40, 5), key='_IN_'), # row 1, col 0
sg.Input(key='_HIDDEN_', visible=False, # row 1, col 1
enable_events=True),
sg.FilesBrowse(key='_HIDDEN_',
tooltip='Choose one or more files',
initial_folder='data/{}'.format(ti[device][0]))],
[sg.Combo(list(ti.keys()), enable_events=True, size=(8, 1),
sg.FilesBrowse(key='_HIDDEN_', initial_folder=None, # row 1, col 2
tooltip='Choose one or more files')],
[sg.Combo(list(ti.keys()), enable_events=True, size=(8, 1), # row 2
key='_COMBO_', tooltip='Select the instrument')],
# [[sg.Frame(d, frameLayout[d])] for d in devices],
# for d in devices],
[sg.Frame('CTD', frameLayout['CTD'], key='_FRAME_CTD', visible=False),
sg.Frame('XBT', frameLayout['XBT'],
key='_FRAME_XBT', visible=False),
sg.Frame('LADCP', frameLayout['LADCP'],
key='_FRAME_LADCP', visible=False),
sg.Frame('TSG', frameLayout['TSG'], key='_FRAME_TSG', visible=False)],
[sg.OK(), sg.CloseButton('Cancel')]])
# [sg.CloseButton('Run'), sg.CloseButton('Cancel')]])
[sg.Frame(d, frameLayout[d], key='_FRAME_{:s}'.format(d) , visible=True) # row 3
for d in devices],
[sg.OK(), sg.CloseButton('Cancel')]]) # row 4
# [sg.CloseButton('Run'), sg.CloseButton('Cancel')]])
# create a local instance windows used to reload the saved config from file
window = sg.Window('Oceano converter').Layout(layout)
......@@ -95,11 +88,16 @@ def defineGUI():
return window
def updateFilesBrowseCombo(extentions):
e = window.Rows[1][2] # hardcoded
e.FileTypes = [] # init to empty list
def updateFilesBrowseCombo(extentions, x, y):
'''# special function used to update the FilesBrowseCombo with canvas poisition
# instead of key because the same key is assign to shadow input object
'''
e = window.Rows[x][y] # hardcoded
e.FileTypes = [] # init to empty list
for ext in extentions:
e.FileTypes.append(("{} files".format(ext), "*.{}".format(ext)))
e.initial_folder = 'data/{}'.format(extentions[0])
window.Finalize
......@@ -159,12 +157,6 @@ if __name__ == "__main__":
cfg = toml.load(args.config)
# this the select device from command line !
device = str(args.instrument) # convert one element list to str
if device == 'None':
print('Missing option --key or -k, key = {}'.format(device))
print('usage:')
print(parser.usage)
sys.exit(0)
keys = cfg['split'][device.lower()].keys()
# test arguements from sys.argv, args is never to None with default option set
if args.gui or len(sys.argv) == 1:
......@@ -172,15 +164,21 @@ if __name__ == "__main__":
# setup the GUI windows Layout
window = defineGUI()
device = window.FindElement('_COMBO_').DefaultValue
updateFilesBrowseCombo(ti[device])
# get all devices
for d in list(ti.keys()):
frame = '_FRAME_' + d
print(frame)
if d == device:
print(d)
window.FindElement(frame).Update(visible=True)
keys = cfg['split'][device.lower()].keys()
# can't update combo with FindElement('_HIDDEN_').Update(), we use this function
# with hardcoded FilesBrowseCombo position
updateFilesBrowseCombo(
ti[device], filesBrowsePosition_column, filesBrowsePosition_row)
# set the rigth frame for device visible, dosn't work
# File "C:\git\python\PySimpleGUI\PySimpleGUI.py", line 2362, in Update
# self.TKFrame.pack()
# AttributeError: 'NoneType' object has no attribute 'pack'
# for d in list(ti.keys()):
# print(d)
# if d == device:
# window.FindElement(
# '_FRAME_{:s}'.format(d)).Update(visible=True)
# main GUI loop
while True:
......@@ -199,14 +197,15 @@ if __name__ == "__main__":
# test if a or more file are selected
if not all(args.files):
sg.Popup("Cancel", "No filename supplied")
#raise SystemExit("Cancelling: no filename supplied")
# raise SystemExit("Cancelling: no filename supplied")
continue
break
if event is '_COMBO_':
# you have to go into the bowels of the pygi code, to get the instance of the Combo
# by the line and column number of the window to update its "fileType" property.
updateFilesBrowseCombo(ti[values['_COMBO_']])
updateFilesBrowseCombo(
ti[values['_COMBO_']], filesBrowsePosition_column, filesBrowsePosition_row)
# update the Multilines instance from FilesBrowse return
if event is '_HIDDEN_':
......@@ -247,9 +246,22 @@ if __name__ == "__main__":
# test if a or more file are selected
else:
if args.files == []:
print('You need to specify one or more files to process !!!', end='\n\n')
print(
'Error, you need to specify one or more files to process !!!', end='\n\n')
parser.print_help(sys.stderr)
sys.exit(1)
else:
files = []
for f in args.files:
files.append(f.name)
args.files = files
if device == 'None':
print(
'Error: missing option -i or --instrument, instrument = {}\n'.format(device))
parser.print_help(sys.stderr)
sys.exit(1)
keys = cfg['split'][device.lower()].keys()
# in command line mode (console)
fe, n, m = process(args, cfg, device)
print("Dimensions: {} x {}".format(m, n))
......
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