add max value from sqlite from each profile

Makefile

@@ -3,7 +3,7 @@ MAIN = $(PROJECT).py
 PYTHON = python
 PYLINT = pylint
 TEST_PATH = tests
-OPTIONS_CTD = data/CTD/cnv/dfr2900[1-3].cnv -i CTD -k PRES ETDD TEMP PSAL DOX2 DENS SVEL FLU2 FLU3 TUR3 NAVG
+OPTIONS_CTD = data/CTD/cnv/dfr2900?.cnv -i CTD -k PRES ETDD TEMP PSAL DOX2 DENS SVEL FLU2 FLU3 TUR3 NAVG
 OPTIONS_XBT = data/XBT/T7_0000*.EDF -i XBT -k DEPTH TEMP SVEL
 OPTIONS_LADCP = data/LADCP/*.lad -i LADCP -k DEPTH EWCT NSCT
 

ascii.py

@@ -56,7 +56,16 @@ def writeHeader(hdrFile, cfg, device, fe, r):
                     print(f"{fmt}  " % (fe[k][i]), end='')
                     f.write(f"{fmt}  " % (fe[k][i]))
 
-
+        # get max value for each profile
+        col = f"MAX({fe.keys[0]})"
+        query = fe.db.query(f"SELECT {col} FROM data WHERE station_id = {int(fe['PROFILE'][i])}")
+        for idx, item in enumerate(query):
+            dt = item[col]
+            if dt == None:
+                pass
+            else:
+                print("%6.1f  " % (item[col]))
+                f.write("%6.1f  " % (item[col]))
         print(end = '\n')
         f.write('\n')
       

file_extractor.py

@@ -427,6 +427,7 @@ if __name__ == "__main__":
     for file in args.files:  
         files += glob(file)  
 
+    # call fe with  dbname='test.db' to create db file
     fe = FileExtractor(files, Roscop('code_roscop.csv'), args.keys)
     #print(f"File(s): {files}, Config: {args.config}")
     cfg = toml.load(args.config)

oceano.py

@@ -247,6 +247,7 @@ def process(args, cfg, ti):
         args.keys = cfg['split'][device.lower()].keys()
 
     # extract header and data from files
+    #fe = FileExtractor(args.files, r, args.keys, dbname='test.db')
     fe = FileExtractor(args.files, r, args.keys)
 
     # prepare (compile) each regular expression inside toml file under section [<device=ti>.header]