rename test.tom to config.toml and move to root

file_extractor.py

@@ -425,7 +425,7 @@ if __name__ == "__main__":
     parser.add_argument('-d', '--debug', help='display debug informations',
                         action='store_true')
     parser.add_argument('-c', '--config', help="toml configuration file, (default: %(default)s)",
-                        default='tests/test.toml')
+                        default='config.toml')
     parser.add_argument('-i', '--instrument', nargs='?', choices=['CTD','XBT','LADCP'],
                         help='specify the instrument that produce files, eg CTD, XBT, TSG, LADCP')
     parser.add_argument('-k', '--keys', nargs='+', default=['PRES', 'TEMP', 'PSAL'],

oceano.py

@@ -53,7 +53,7 @@ def processArgs():
     parser.add_argument('--demo', nargs='?', choices=ti.keys(),
                         help='specify the commande line for instrument, eg CTD, XBT, TSG, LADCP')
     parser.add_argument('-c', '--config', help="toml configuration file, (default: %(default)s)",
-                        default='tests/test.toml')
+                        default='config.toml')
     parser.add_argument('-i', '--instrument', nargs='?', choices=ti.keys(),
                         help='specify the instrument that produce files, eg CTD, XBT, TSG, LADCP')
     parser.add_argument('-r', '--roscop', nargs='?',

test_xarray.py

@@ -7,10 +7,17 @@ import os
 
 #plt.rcParams.update({'font.size': 20, 'figure.figsize': (10, 8)}) 
 
-ncfiles = ['netcdf/OS_PIRATA-FR29_CTD.nc', 'netcdf/OS_PIRATA-FR29_XBT.nc','netcdf/OS_PIRATA-FR29_LADCP.nc']
-for ncfile in ncfiles:
-    print(f"Read {ncfile}")
-    ds = xr.open_dataset(ncfile)
-    print(ds)
-    df = ds.to_dataframe()
-    print(df)
\ No newline at end of file
+#ncfiles = ['netcdf/OS_PIRATA-FR29_CTD.nc', 'netcdf/OS_PIRATA-FR29_XBT.nc','netcdf/OS_PIRATA-FR29_LADCP.nc']
+ncfiles = ['netcdf/OS_PIRATA-FR29_CTD.nc']
+for file in ncfiles:
+    print(f"Read {file}")
+    # with automatically closes the dataset after use
+    with xr.open_dataset(file) as ds:
+        #print(type(ds.keys()))
+        for key in ds.keys():
+            print(f"{key} ", end='')
+            #print(ds[k])
+    #print(ds)
+    #print(ds['PROFILE'])
+    #df = ds.to_dataframe()
+    #print(df)
\ No newline at end of file

tests/test_config.py

@@ -12,7 +12,7 @@ class testConfig(unittest.TestCase):
 
     def setUp(self):
         """Initialisation des tests."""
-        self.cfg = toml.load('tests/test.toml')
+        self.cfg = toml.load('config.toml')
 
         self.glob = {'author': 'jgrelet IRD March 2019 PIRATA-FR29 cruise',
                      'debug': False, 'echo': True,