add ascii.py, remove netcdf dir from git

if output dirs don't exists, create them

ascii.py

+# ascii.py
+# write hdr and data in ascii files
+
+import os
+
+def writeAscii(cfg, device, fe, r, variables_1D):
+    if not os.path.exists(cfg['global']['ascii']):
+        os.makedirs(cfg['global']['ascii'])
+        
+    fileName = "{}/{}.{}".format(cfg['global']['ascii'], cfg['cruise']['cycleMesure'], device.lower())
+    print('writing header file: {}'.format(fileName))
+    writeHeader(fileName, fe, r, variables_1D)
+    
+    fileName = "{}/{}_{}".format(cfg['global']['ascii'], cfg['cruise']['cycleMesure'], device.lower())
+    print('writing Ascii data file: {}'.format(fileName))
+    writeData(fileName, fe, r, variables_1D)
+    print('done...')
+    
+def writeHeader(hdrFile, fe, r, variables_1D):
+    f = open(hdrFile, 'w')
+    f.write("Header file OK !")
+    f.close()
+    
+    
+def writeData(dataFile, fe, r, variables_1D):
+    f = open(dataFile, 'w')
+    f.write("ASCII file OK !")
+    f.close()
+   
\ No newline at end of file

netcdf.py

 import logging
 from netCDF4 import Dataset
 from numpy import arange, dtype
+import os
 
 
-def writeNetCDF(fileName, fe, r, variables_1D):
+def writeNetCDF(cfg, device, fe, r, variables_1D):
 
     # ncvars is a dictionary that store a netcdf variable for each physical parameter key
     ncvars = {}
@@ -14,6 +15,9 @@ def writeNetCDF(fileName, fe, r, variables_1D):
     dims_2D = ['TIME', 'DEPTH']
 
     # create netcdf file
+    fileName = "{}/OS_{}_{}.nc".format(cfg['global']['netcdf'], cfg['cruise']['cycleMesure'], device)
+    if not os.path.exists(cfg['global']['ascii']):
+        os.makedirs(cfg['global']['netcdf'])
     nc = Dataset(fileName, "w", format="NETCDF3_CLASSIC")
     logging.debug(' ' + nc.data_model)
     print('writing netCDF file: {}'.format(fileName))

netcdf/.emptydir

-Do not delete this file.
\ No newline at end of file

oceano.py

@@ -11,6 +11,7 @@ from configparser import ConfigParser
 import os
 import distutils.util as du
 import netcdf
+import ascii
 from physical_parameter import Roscop
 
 # typeInstrument is a dictionary as key: files extension
@@ -169,9 +170,8 @@ def process(args, cfg, ti):
 if __name__ == "__main__":
     '''
     usage:
-    > python oceano.py data/CTD/cnv/dfr2900[1-3].cnv -d
-    > python oceano.py data/CTD/cnv/dfr2900[1-3].cnv -k PRES TEMP PSAL DOX2 DENS
-    > python oceano.py data/CTD/cnv/dfr29*.cnv -d
+    > python oceano.py data/CTD/cnv/dfr2900[1-3].cnv -i CTD
+    > python oceano.py data/CTD/cnv/dfr29*.cnv -i CTD -k PRES TEMP PSAL DOX2 DENS -d
     '''
     # recover and process line arguments
     parser = processArgs()
@@ -311,5 +311,8 @@ if __name__ == "__main__":
         # print(fe.disp())
 
     # write the NetCDF file
-    ncfile = "netcdf/OS_{}_{}.nc".format(cfg['cruise']['cycleMesure'], device)
-    netcdf.writeNetCDF(ncfile, fe, r, variables_1D)
+    netcdf.writeNetCDF(cfg, device, fe, r, variables_1D)
+    
+    # write ASCII hdr and data files
+    ascii.writeAscii(cfg, device, fe, r, variables_1D)
+

tests/test.toml

@@ -2,8 +2,11 @@
 author         = "jgrelet IRD March 2019 PIRATA-FR29 cruise"
 debug          = false
 echo           = true
-#codeRoscop     = 'C:\git\python\oceano2python\code_roscop.csv'
-codeRoscop     = '/home/jgrelet/git/oceano2python/code_roscop.csv'
+codeRoscop     = 'C:\git\python\oceano2python\code_roscop.csv'
+#codeRoscop     = '/home/jgrelet/git/oceano2python/code_roscop.csv'
+ascii          = "ascii"
+netcdf         = "netcdf"
+odv            = "odv"
 
 [cruise]
 cycleMesure    = "PIRATA-FR29"